barSeed - Barley Seed Development Database

Probe CUST_40833_PI390587928

Source Contig U35_19237

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40833_PI390587928	Hv_44K_v2	ATTTACCAACAGACGTTGAAGCATCACAGGTTACTGCTCTTGATGAGCGGTACAAGCTGT	745	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.697	1.169	2.273	2.248	0.757	0.801
Raw	155.195	418.571	686.821	1095.549	128.108	146.463

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370715	2208	7e-23	1628 - 1687	98	59 / 60	plus	ABC10614
MLOC	MLOC_26190.1	1810	7e-23	1224 - 1283	98	59 / 60	plus	ABC10614
JLOC1	JLOC1_17802.1	1928	4e-23	1322 - 1381	98	59 / 60	plus
Harvest21	ABC10614	1320	3e-25	746 - 805	100	60 / 60	plus	ABC10614
Harvest35	U35_19237	1320	3e-25	746 - 805	100	60 / 60	plus

Contig Sequence (1320 bp)

>U35_19237 1320 Hv_44K_v2
TTTGGGCCCTACGAGGGGGAGAGGTTCGATCTGCTCGTGCTGCCGCCCAGTTTCCCCTAC
GGCGGCATGGAGAACCCCAGGATGGTCTTCCTCACGCCCACGGTCATCAAAGGGGACGCC
GCGGGGGCGCAGGTTGTGGCCCATGAGCTCGCACATAGCTGGACTGGAAACCTCATCACC
AACAAAACTAATGAGGATTTCTGGCTAAATGAGGGTTTCACAACCTATGCTGAGAGGAGG
ATTGTCGAGGTAGTGCAAGGTGAGGAGCGGGCGGCCTTAAACAGCGGAATTGGATGGAGA
GGGTTGAATAGAATGATGGAGAGATTTAAGGATAACATGGAGTTCACCAAGCTCAAGCCG
AAGATGGCAGGGATTGATCCTGATGATGTGTACTCAGAAGTGCCCTATGAGAAAGGCTTC
CAGTTCCTTTGGCGCATCGAACGCCAGATTGGCCGACCTGCATTTGATGAATTCCTGAAG
AAGTATATTGCCACCTTCAAGTTCCAATCGATAGATACAGAGACATTTCTCGAATTCCTG
AAAGCCAATGTACCTGGGATAGAAAATCAAATTGACCTTCATGAGTGGATCGAGGGTACT
GGTATCCCTTCCGATGCCATGGAGCCAGAATCAGCTACCTATAAGAAGATTTGTGCCTTG
GCTGCAGAGTTTAAGTCTGGAAAAATTCCAAGTGAAGAGGAGGTGGCAGACTGGAGCGGA
CAAGAGTGGGAGCTTTACTTGGAAAATTTACCAACAGACGTTGAAGCATCACAGGTTACT
GCTCTTGATGAGCGGTACAAGCTGTCAGAAAGCCGCGATTACGAGGTTAAAGTCGCATTC
CTCCAGCTAGCGATCCCCACGGGATGCAGGTGTTACTTCAACGAGGTGGAGAAATGCTTG
AAGCAAGTGGGAAGGATGAAGTACCTGCGCCCGCTCTACAGCTCGCTGGCTCGATGCTCA
GGGGAGGAGGAGAAGATGCTGGCCAAGAGGATCTTCTCGGAGGCCCAGGAGTTTTACCAC
CCCATAGCCCGCGGCGTCGCGGAGAGCATCCTTTTGAAGCATGGCTAGCTGAGTCGAAGC
CACATTTTACTGAGCCTGAAGTAGAGAGAACTGTTTGCTCGCTCATTTGCCCTACATAAA
ATTATCTCTCTCGGGGAGTTGACATTGGATAAAACTCTGAACTTCCTTCCGTGATGTGTC
ATGTGAGACTGCATGTGCGTAATTTATTCTGACCCTGTAAGGAACATGAAACTCTGCTTC
TTGATAACATTATCCTGTGGTGATACTGCTATGATCTCTTAATGGTCATCGTCTTTTTAA

Homology of Contig U35_19237 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g60460.1	612	protein\|aminopeptidase, putative, expressed
Brachypodium v1_2	Bradi1g03860.1	612
Arabidopsis v10	AT5G13520.1	616	peptidase M1 family protein \| chr5:4342117-4344571 REVERSE LENGTH=616