barSeed - Barley Seed Development Database

Probe CUST_40830_PI390587928

Source Contig U35_19239

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40830_PI390587928	Hv_44K_v2	GTAATATAAGTTTGGAATAAGGCTTCCAAGCCAGAATGACACATTGTCAATGCCAAAAAA	1510	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52907.1	5176	7e-23	3656 - 3712	100	57 / 57	plus	ABC10129 ABC12040
MLOC	MLOC_52907.2	3918	7e-23	1557 - 1613	100	57 / 57	plus	ABC10129 ABC12040
JLOC1	JLOC1_33934.2	3082	4e-23	1885 - 1941	100	57 / 57	plus
JLOC1	JLOC1_33935.1	4732	4e-23	1049 - 1105	100	57 / 57	minus
JLOC1	JLOC1_33934.1	2798	4e-23	1601 - 1657	100	57 / 57	plus
Harvest21	ABC12040	1380	3e-25	1310 - 1369	100	60 / 60	plus	ABC12040
Harvest35	U35_19239	1581	3e-25	1511 - 1570	100	60 / 60	plus

Contig Sequence (1581 bp)

>U35_19239 1581 Hv_44K_v2
GCGGAGCATAACCAAACGCCAAGACGCAAAGCGATCGAGGGCTTCCTCCCGATCCTCCTG
TCCTGTCCTGTAGCCGCGCGTGGGAAAGGGGGCCGGGAACTTTTCCTCGGTGCGGCGGCG
GCCAGTGCAGTCCGTCCATATATATATATAGCGATGGAGAGGGGCTGGTTCGGGTGGAGG
AAGGCGAAGCAGGGCGGGGGGAAGGAGGAGGAGGGTCGGGCCAAGGTGGTGGTGGACGGG
TCCGGGATACGGCAGCTGGTGGAGGACCGGGAGGCGTTCGGCATGTTCGCGGAGACCAAG
TTCCGGCAGCTCGACGCCGACGGCGACGGCCGGCTGTCCGTGCGGGAGCTGCAGCCCGCC
GTGGCCGACATCGGCGCCTCGCTCGGCCTGCCCGCGCAGGGCTCCTCGCCCAACGCCGAC
CACATCTACTCCGAGGCTATGAGCGAGTTCACTCATGGTCACGGGAACCAGGAGGGGGTG
AGCAGGGCAGAGTTCCAGGAGGTCCTGTCCGACATTCTCCTCGGCATGGCGGCCGGGCTC
AAGAAGGACCCGATCGTGATACTGCGCATCGACGGCGAGGACCTCAGGGACTTCTTGTCC
AGCCCAAGGTATGAGCCGGTAGCCGCTGCCATCTTCTCACAGGTTGGGTCTGAAGATGCC
CCTCTCCGGCAATGCCTGCTAGCCGCCGTTCAGCAGCTTGGCGTCGACCACGGAATGCCC
CCAGCCGCTGACGCTTGGGTGGTAGAGAACGTGGTAGAGCCGGCATTGCAGCAGCTCCCC
GCCGATGAGCTCGAGCGACGGGCGTCCCGGGACGTCTTCTTGGAGCAGCTGAAGAAGCTG
CTGGCCGGCGTCGCGGAGCAGCTTCAGGAGCGGCACGTGATCGTCGCGCACACGGAGAAC
ACCTTCGACGGGAGCGGCGTCAGGAGGCTGCTGGGTAACAAGTTCGAGCTCGACAAGCTG
CTGGATTCTGTGTGGAGGGAGGTGCCGGCAGAGCACAGGAAGAAGGCGCCCAAGGACAAG
GAGCACCTGCGGGTCGCGCTCGATAAGATGGCCGACGCAGCAAGCCTGCCACCCCATGGC
GCTGTTGATCGGGTGGACGCCGTCGTGGACGAGACGCTCAAGGTGGCGGACGCCGGCGAC
GGGAAGGCGGTCGAGGAAGCGGAGTTCAAGAAGCTGCTGACGGACGTCCTTGGGGCCGTG
ATGCTGCGGCTGAGCGGCGAACCGATCTTCTTCTCCACCAGCACCGTCGTCCACGAGTCG
ATGCCCGGCTCGTCCGCCCTGTTGCCGTCGCCCGCGGTGGCATCTCCGCCGAGCGAGTAG
CAACGCGCGCATATAAAAGGTAAATAGTACTGTAGGAGAGTGGGCATAAGGCCTCTCCGT
AAGCGGTGCATGTGGTTGTGTTTTTTATCTGATCACGAGCATTCATGCTTTGCTATGGTT
TGTTGGAAACTGACGGAATGCAACGCTGCAGTTCGTCAAGTACTCCAGCAGTATGTTGAC
ACTGGTTGGTGTAATATAAGTTTGGAATAAGGCTTCCAAGCCAGAATGACACATTGTCAA
TGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19239 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g14590.1	393	1e-170	protein\|calcium-binding EF hand family protein, putative, expressed
Brachypodium v1_2	Bradi1g68010.1	388	0.0
Arabidopsis v10	AT4G38810.2	375	3e-124	Calcium-binding EF-hand family protein \| chr4:18115607-18118860 REVERSE LENGTH=375