barSeed - Barley Seed Development Database

Probe CUST_40827_PI390587928

Source Contig U35_45504

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40827_PI390587928	Hv_44K_v2	CACCTCGCTTATTGCGGCATCGGCACGGCACTACCTGCTGCAGCCCATCATCTTCGACCA	67	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.628	0.970	2.442	2.459	1.318	0.814
Raw	3.103	10.739	26.897	43.039	7.133	4.498

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18933.2	3981	3e-21	778 - 834	98	56 / 57	plus	ABC24487
MLOC	MLOC_18933.1	1874	3e-21	794 - 850	98	56 / 57	plus	ABC24487
JLOC1	JLOC1_13118.1	1874	2e-21	771 - 827	98	56 / 57	plus
Harvest21	ABC44483	127	3e-25	68 - 127	100	60 / 60	plus
Harvest35	U35_45504	127	3e-25	68 - 127	100	60 / 60	plus

Contig Sequence (127 bp)

>U35_45504 127 Hv_44K_v2
ATTCGGGGAGCATCCCGGAGTCATTCTACACCAACAGCGGGCTGAAGCTGCGGGTGCTGT
GGACCATCACCTCGCTTATTGCGGCATCGGCACGGCACTACCTGCTGCAGCCCATCATCT
TCGACCA

Homology of Contig U35_45504 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None