barSeed - Barley Seed Development Database

Probe CUST_40824_PI390587928

Source Contig U35_21551

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40824_PI390587928	Hv_44K_v2	GGTCGTCTCATAATCATGATCATTACTCATAAATTGATGGACGGATGACTATCCAAAAAA	990	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	2.560	2.526	2.312	2.997	2.701	2.688

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362980	2843	3e-21	774 - 833	97	58 / 60	minus	ABC11013 ABC15105
MLOC	MLOC_6839.1	2194	3e-21	2015 - 2071	98	57 / 58	plus	ABC15105
MLOC	MLOC_6839.2	1442	3e-21	1284 - 1340	98	57 / 58	plus	ABC15105
JLOC1	JLOC1_4474.2	2042	2e-21	1789 - 1845	98	57 / 58	plus
JLOC1	JLOC1_4474.1	1465	2e-21	1212 - 1268	98	57 / 58	plus
Harvest21	ABC15105	1061	3e-25	991 - 1050	100	60 / 60	plus	ABC15105
Harvest35	U35_21551	1061	3e-25	991 - 1050	100	60 / 60	plus

Contig Sequence (1061 bp)

>U35_21551 1061 Hv_44K_v2
TGCCCTGCTCAGGGGACTGGGATCAGGGAAGAAGAGAAGGCAAGCAAGCGGTCGTGACCA
TGGAGTTCAAAGCGGCCGTTTTCACCGCCGCCGCGCTGGCCGTCCTCCTCTGCTCCCCGG
CATCGGCCCAGAAGAGCCCGCCCGCTCCGGCGCCGGTGTCGGTGTCGATTCCGCCGTCCC
TCGCGCCGGCGCCGGCGCCGGCCCCGCGCTACGTGGACCTCGCGGCGCTCCTGGACGTGG
CCGGCCCGTTCCACACCTTCCTGACCTACCTGCAGAAGACGAACGTGATCGAGACCTTCC
AGCGCCAGGCCAACAAGACCGACGAGGGCATCACCATCTTCGTCCCCAAGGACTCGGCGT
TCGCCGCGCTCAAGAAGTCCACCTTCTCCAACCTCACCGGCGACCAGCTCAAGACGCTGC
TCCTCTACCACGCCTTCCCCAAGTACTACCCGCTGGCGCAGTTCAGGAACCTCAGCGTGC
TCAACCCGGTGGACACCTTCGCCGGCTCGCCCTACACGCTCAACCTCACCGACGACATGG
GCACCATCACCGTCGAGTCCATGTGGTCCAAGCCCAAGATCTCCAGCAGCGTCTACGCCA
CCAAGCCCATCGCCGTCTACTCCATCAACAAGGTGCTCCTGCCCATGCAGCTCTTCAGCA
AGGACCCGCCGCTGGCGCCGGCGCCCGCGCCCGCGCCGGAGTCAGGGGCGTCGGACATCG
CCCCCAGCCCGGGCGGCGCCAAAGCGGGCGCCGGGAACGGCAAGGCGGACTCGACGAGCG
CCGGGTATGTCGGCGCTGCGAATTGCTTGGGGCTGCTGGCTACCGCGGCAGGTGGCTTGA
TGCTCCTGTGGTGAGAGAGAAGGGAACACGTCGATGGTTCTTGTCATTTGTAAGCACTTG
AATTTGATTTTGAGCTGGTTGATGGGAGTCATTCTTTTGGACATAGTAGGCATGATGTTA
GGATTGAATCCGAGTATTTTACATCATATTGGTCGTCTCATAATCATGATCATTACTCAT
AAATTGATGGACGGATGACTATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21551 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g30486.1	268	4e-90	protein\|fasciclin domain containing protein, expressed
Brachypodium v1_2	Bradi4g33490.1	281	9e-92
Arabidopsis v10	AT2G04780.1	254	9e-58	\| Symbols: FLA7 \| FASCICLIN-like arabinoogalactan 7 \| chr2:1677488-1678252 FORWARD LENGTH=254