barSeed - Barley Seed Development Database

Probe CUST_40823_PI390587928

Source Contig U35_21552

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40823_PI390587928	Hv_44K_v2	AATGCTGTTGCCTTTTTTGGGTATGTCACCTTCTTTTGCTAAAGGTAATTTTGTCTAGAA	531	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.506	1.457	1.180	0.850	0.474	0.382
Raw	280.136	418.478	297.670	333.945	65.722	57.604

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_209.1	3009	2e-24	14 - 73	100	60 / 60	minus	ABC19281
JLOC1	JLOC1_141.2	2995	3e-24	2937 - 2995	100	59 / 59	plus
JLOC1	JLOC1_141.1	2989	3e-24	2931 - 2989	100	59 / 59	plus
Harvest35	U35_21552	606	3e-25	532 - 591	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_21552 606 Hv_44K_v2
CTAGTTCTCATGGGTCTGGTAATGTGCCGATGACATCAGAATATGTCCAGAGCTGAAATA
GAAGAACAGCTTTCTGTAATCTATATACTCATATGGTTCTTGCGAGTGGTGGGAAGAACA
TATAATATTGCAGTGATGGCAAAGGAGGATGGTCTCAGTCAAATATACAAAGGATGATCT
TTGGCCACTTGAGGAAGCTGAAATTGATGAATTATGTTGTTGAGACTTGGGCAGAGAAGG
CTGCTACAGTGGATGGTGCCCGAGGGAAACATGATCACTGAATGTGCTAAGCCTTCGTTC
TGTCAGTCAAAACTTTTAGGGTGCTTTGTGTTGCTTTCCATTGCACGATCTGAACTTGTT
TTAGCGGTTTAGTTTTGTCATTCGTATATGAATTTTGTTGTTTTCCTGATGGCTTGTGCT
GTTTTTTCTGTTCTTCGGGTGCTTAAATTGGCACAAATTGTTACTCAAGCCTTGCGTATC
AGCCTGACAAATCATCATTTCTGCAGTTTGGGTTAATTAGTACTAGCTGATAATGCTGTT
GCCTTTTTTGGGTATGTCACCTTCTTTTGCTAAAGGTAATTTTGTCTAGAAAAAAAAAAA
AAAAAA

Homology of Contig U35_21552 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None