barSeed - Barley Seed Development Database

Probe CUST_40822_PI390587928

Source Contig U35_21553

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40822_PI390587928	Hv_44K_v2	TAGCTTTTCGACCAGTTTATTACTTCTTCAACAGCCAAGAACCATGAGCTCTCGGATGGC	48	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365405	1216	2e-24	61 - 120	100	60 / 60	plus	ABC05887 ABC05888 ABC05890 ABC15936
MLOC	MLOC_82029.1	545	2e-24	247 - 306	100	60 / 60	plus	None
JLOC1	JLOC1_54558.1	1461	8e-25	152 - 211	100	60 / 60	plus
Harvest21	ABC05886	855	3e-25	49 - 108	100	60 / 60	plus
Harvest35	U35_21553	685	3e-25	49 - 108	100	60 / 60	plus

Contig Sequence (685 bp)

>U35_21553 685 Hv_44K_v2
CAGATCAACACCAACAGAGATCGCTTCCCACCCACCAAGACCTCCCATTAGCTTTTCGAC
CAGTTTATTACTTCTTCAACAGCCAAGAACCATGAGCTCTCGGATGGCCGGAGCCACGCT
TCTGCGCCACCTGGGCCCCCGCCTCTTCGCCGCCGCCGAGCCGGCCTCCGGGCTCGCCGC
GAGCGCAAGGGGCGTCATGCCCGCCGCCACGAGGATCTTCCCGGCGCGGATGGCCAGCAC
GGCCGCCGCCCCGCATGCCAAACAAGAAGAAGCCACTGAGAAGCCCCAGGGCGCGACGAC
GCCGGAGCAGGCGGTGAGCTACTGGGGCATCGAGCCGCGGAAGCTCGTCAAGGACGACGG
CACGGAGTGGCCGTGGTTCTGCTTCAGGCCGTGGGACACGTACCGGCCGGACACGTCCAT
CGACGTGGCCAAGCACCACGAGCCCAGGGCGCTGCCGGACAAGGTGGCGTACCTCATCGT
GCGGACGCTGCGCGCGGGCAGTGACCTCTTCTTCCAGCGCCGGCACGCCAGCCACGCGCT
GCTGCTGGAGACGGTGGCGGCCGTGCCGCCCATGGTCGGCGGCGTGCTGCTGCACCTGCG
CTCGCTCCGCCGCTTCGAGCACAGCGGCGGCTGGATCCGCGCGCTCATGGAGGAGGCCGA
GAACGAGCGCATGCACCTCATGACC

Homology of Contig U35_21553 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g51160.1	336	1e-91	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi5g20547.1	325	1e-98
Arabidopsis v10	AT3G27620.1	329	4e-60	\| Symbols: AOX1C \| alternative oxidase 1C \| chr3:10229289-10230595 REVERSE LENGTH=329