barSeed - Barley Seed Development Database

Probe CUST_40821_PI390587928

Source Contig U35_21554

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40821_PI390587928	Hv_44K_v2	GAATAGGAACTCATGCAACTTGAGTAGAGCAATGTTGTAATAAATGGCCATTTCTTTTGA	393	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20442.1	1206	2e-24	930 - 989	100	60 / 60	plus	ABC20418
MLOC	MLOC_20442.2	904	2e-24	831 - 890	100	60 / 60	plus	ABC20418
MLOC	AK375174	1770	6e-24	1712 - 1770	100	59 / 59	plus	ABC20418
JLOC1	JLOC1_14163.1	1017	8e-25	843 - 902	100	60 / 60	plus
Harvest35	U35_21554	469	3e-25	394 - 453	100	60 / 60	plus

Contig Sequence (469 bp)

>U35_21554 469 Hv_44K_v2
CGCAGTTCGACCTCGGGCTCGGCGGATTCCCGTGGACGGCACCGCCGGCCACGGACCACC
TCTACGACAGGCTCGCGGCGCCGTCGGGTGGCTGTGATGGGGCGCTCACCCCCGCCGGCG
CGTGGGACGACTTGGGCGGCCTCGACTTCACCTGGCCACCGCCTGCCGGCAACTGACCAG
CGTCATCATGTCAGTCAGCATGTCGCCGGCGCGTTCGAGGCTCCTGTTTTATCATCGCAG
CCTCATGTGATGTGACCAACTAGACATCTTTCTCCACACTTGATGTCTGATTACATAGCT
CGATCCATTTGAAGTTAAATTTTTCATGTAATTTGGATGTGGCTAGCAAGCGCATGTTGT
TAAGTACTTTGTTGTGCTAGATAAACCTCATGGGAATAGGAACTCATGCAACTTGAGTAG
AGCAATGTTGTAATAAATGGCCATTTCTTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None