- Probe CUST_40820_PI390587928
- Source Contig U35_21555
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40820_PI390587928 | Hv_44K_v2 | GGCGTTTTGCATCATGTGTATCACTATCAGTTAAGAAATGAATATGTGAAAGCAGTACTT | 504 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.212 | 2.237 | 1.629 | 0.784 | 0.299 | 0.276 |
| Raw | 1152.659 | 1881.495 | 1167.967 | 870.227 | 115.865 | 119.920 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_82112.1 | 1332 | 2e-24 | 1162 - 1221 | 100 | 60 / 60 | plus | ABC16009 ABC31008 |
| JLOC1 | JLOC1_54614.1 | 1337 | 8e-25 | 1157 - 1216 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC16009 | 585 | 3e-25 | 505 - 564 | 100 | 60 / 60 | plus | ABC16009 |
| Harvest35 | U35_21555 | 585 | 3e-25 | 505 - 564 | 100 | 60 / 60 | plus |
Contig Sequence (585 bp)
>U35_21555 585 Hv_44K_v2 GAGGAACGTCGAGGACCCGCTGGTCCTCGCCGCCGCCGTGTCCGAGCTGGACGGCGCGGA GGTGGCCGGCCTTCTTAGGTACCTCGCCAAGTGGGTGGGCAAGTACTCCAGGTTCCCAGA GGCCCAGGCTTGCCCGGAGGCAGCGGGAATGCTCAAGCTGGAGCAGTGCGAGAGCGTGCC ATCGCTTGTGGCGGTGGCCAGAGCCATGGGCCTGGTGCTGGACCAGCATTTCTCCCACAT CGTGCTCAACGCCGAGCTGCGGCAGGACTTGTTGGCCGCGGGGGTGATGGCGAAAGAGCT CGCTGTCGAGGCCGAATCTTCCGGTCCGATCCTGGACTTGCTGCGCCATATGCTGCAGGC TGTGTGAGAGATTAAACTGTCTGTTTACTTTTGGTGCTACTAGTTCTGATGATGCTGGTG TCCTAGAATTTTTGGTTGCAGCTATGAGTTGTGTGCTCTAGCAAATCGTTGCCGTAATTC TAAATTGTAGCAGTCCCTTGTATTGGCGTTTTGCATCATGTGTATCACTATCAGTTAAGA AATGAATATGTGAAAGCAGTACTTTTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_21555 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g01270.1 | 387 | 2e-55 | |
| Arabidopsis v10 | None |