barSeed - Barley Seed Development Database

Probe CUST_4081_PI390587928

Source Contig U35_16797

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4081_PI390587928	Hv_44K_v2	GAATCCAACTGTAACAATATAGCTTCGAGTGAGTTGCGATTAAGAATTTTAGGTTGCAAA	1279	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.114	2.129	1.077	0.493	0.828	0.668
Raw	19.246	29.234	13.636	8.610	4.484	2.975

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16151.1	1472	3e-22	26 - 84	98	58 / 59	minus	ABC09255
MLOC	MLOC_16151.2	1390	3e-21	1 - 57	98	56 / 57	minus	ABC09255
JLOC1	JLOC1_11108.1	1575	1e-22	1398 - 1456	98	58 / 59	plus
Harvest21	ABC09255	1354	1e-23	1281 - 1340	98	59 / 60	plus	ABC09255
Harvest35	U35_16797	1354	3e-25	1280 - 1339	100	60 / 60	plus

Contig Sequence (1354 bp)

>U35_16797 1354 Hv_44K_v2
GTAAATTAGTTTCGCGAGGAAGGAGGCCTGCAAGTTCCATATCGTCACTGATGACTATTG
CTGCACCAACTCCCATTATCATCAGCAGCTGATTTGACTAGCACTAGTACTTACTGTCCT
ACGAGAACGTGCTCCCGTGCGCATCCGTACCGATAGATCACTAGCAGTAGCAGGCACAGA
CAGATTTGGAGCTGCTCTGCTCTTTAGCGGCCATGTCCAAGAAAGGAATCCAGTATGTCG
TGGTGGATGCCTTCACGGCCCAGCCGTTCAAGGGCAACCCGGCCGCGGTATGCTTCCTGG
TGGACGACGCGGCCGCCCCCGCGGGGGACGGACGGTGGATGCAGTCCGTCGCCGTCGAGT
TCAACCTCTCCCAGACGGCCTTTTTTTCGCGTGACTCGTCCCGCGCGGCCGACGCCGCCA
CGCCGCGGTTCCACCTCCGCTGGTTCACCCCCGTCACGGAGGTCGCGCTCTGCGGGCACG
CGACGCTGGCCACCGCCCACTTCCTCTTCACGTCCGTCCTCGCGGAGAGCCATGGCGTGG
TCGAGTTCGCCACCAAGTCCGGCGTCCTGACCGCCAAGAAGGTTCCTGCACCAGAGACTG
AGGAGGAGCAGGAGAAGCTGTTCATTGAGCTGGACTTCCCCATGATTGACTATGTGGGTT
GCGATCCCGCCGACGAGCTGCCGTCCATCCCGGAGATGCTCAACGGCGCGTCCGCCGTCA
GTGTTCATAAATCAGTGACCACCAACGACTTCATTGTTGAACTTTCATCAGGAAAAGAGG
TTGCCGACGTCCTTCCAAACATCGAAGAAATTAGAAAGTGTGCCGGCAGAGGCGTGATTG
TTACAGCACCGGCGCCTGCTGGATCGGGCTATGACTTCTTCACACGTTTTTTCTGCCCAA
AATTTGGGATTGATGAGGATCCGGTATGTGGCAGTGCACACTGTGTTTTGGCACCCTATT
GGGGTGGAAAGCTGGGGAAACAAAAACTGGTAGCGTTTCAGGTATCTCCAAGGAGCGGGA
CACTATACCTGGAGCTGGATGTTGAGAATCGGCGAGTGCGGATTCAGGGCGAAGCTGTTA
CTGTCATGGCTGGGACACTCTTCGCCTAGCTAGCATATTGACACTTCACGGACTTGCCCT
ATTAAAGAAGACTTTGTAGAAATAAATATATTTGCTGCTATGCGCTGGTCTAACAATCGA
TGCACCAGTTTATGGAATAAAATGGATTATCTGAAAAAAAAAAAAAAAAAAAGGTGGAGC
TGCATGGTAGCAAGTGCTCGAATCCAACTGTAACAATATAGCTTCGAGTGAGTTGCGATT
AAGAATTTTAGGTTGCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16797 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16146.1	310	6e-144	protein\|phenazine biosynthesis protein, putative, expressed
Brachypodium v1_2	Bradi2g09900.1	296	1e-172
Arabidopsis v10	AT4G02860.1	313	3e-84	Phenazine biosynthesis PhzC/PhzF protein \| chr4:1268952-1270508 REVERSE LENGTH=313