barSeed - Barley Seed Development Database

Probe CUST_40816_PI390587928

Source Contig U35_21559

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40816_PI390587928	Hv_44K_v2	CTGTACAACGCCGCTGTATCTGTGTCTGTTCTATAAACGGGAGTTGGGCATTGCAAAAAA	504	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.901	0.339	0.300	1.431	4.810	8.546
Raw	10.995	3.151	2.739	36.814	44.373	90.904

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC14203	574	3e-25	505 - 564	100	60 / 60	plus	ABC14203
Harvest35	U35_21559	574	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (574 bp)

>U35_21559 574 Hv_44K_v2
CAAAAACGAAGAGCAGCAGAGCCGTGTTTAATCACTTGTCAAGGACCCATGGCGTTTCTG
GGAGGATCATCGCGCGTGACGAGGAGCATCAGCAGCCGGAAGATGATGGATGGGAAGAAG
ACCCACGGCGGGTTGGGGTTGTGGCGGCAGGCTCCGGCGCCCGTGAGGCAACTGTTCCGA
AGGGTGAGGCGCGCCGTGCTACGGCCGAAGCGCCCCGCCGTGAGTTTCGGGTACGACCTG
AAGAGCTACTCCCAAAACTTCGACGATGGCCTCGCCCCTGTCCGCCGCCACTTCTCATCG
ATTTGACTTACCGCCCGGCCGGACCACGGCTCTAGGCTGGAGAGTTTGAAGCGTCGTCAC
CTTCTAATTTGATCCTCTAGCTCAGCTACCAGTGTACTGGTATTAGAAAAAGTACTGTTT
GTACATAAGTTGCTTAGTGTTGAAAGTCTGAAACTACCAATATATATATATATATATATA
TATATGTATGTGCTTCAAACTAATCTGTACAACGCCGCTGTATCTGTGTCTGTTCTATAA
ACGGGAGTTGGGCATTGCAAAAAAAAAAAAAAAA

Homology of Contig U35_21559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None