barSeed - Barley Seed Development Database

Probe CUST_40812_PI390587928

Source Contig U35_19243

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40812_PI390587928	Hv_44K_v2	GTGATGGTGTAGTGTTGGAGATTAAAATCATGTAGTACTGCAGTTTCAATGATGTTATGT	811	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.641	1.451	1.236	0.946	0.328	0.399
Raw	407.186	570.419	429.433	521.646	62.280	83.207

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375984	2548	2e-24	2422 - 2481	100	60 / 60	plus	ABC11195 ABC23507 ABC24670 ABC45247
JLOC1	JLOC1_36874.1	732	1e-23	193 - 252	98	59 / 60	minus
Harvest21	ABC11195	461	3e-25	237 - 296	100	60 / 60	plus	ABC11195
Harvest21	ABC24670	689	1e-23	62 - 121	98	59 / 60	minus	ABC24670
Harvest35	U35_19243	1036	3e-25	812 - 871	100	60 / 60	plus
Harvest35	U35_25626	689	1e-23	569 - 628	98	59 / 60	plus

Contig Sequence (1036 bp)

>U35_19243 1036 Hv_44K_v2
GGAAAAGCTCGCCGCCGGCACCGACGGGGCGCCCCCGCCGTGACAGGTGAGAACCGCGGC
GCGTTTCTCGCTGCTTGCTTCGCCCGTCCGTTATCCCGCCGGTCCTAACCGGAAGCCACC
GCGCCGAGTAGGCGCGCGCGTAGCTGCTGCATAAGCCGTCGATTTCCTCAATCCCCAGCA
GCGCTCGTTACCGAATCGCCCGATCCAACTTGAAATTCCTAGGTTTCCACCATCCCCCGA
GAGCTCCGAACCACCGTGCGGGCAGGGACCGGAAGGGGGATGGATAGAGGAGGAGACGGC
TCTGATCTGGAGCTACAGAAGCAAGAATGGGCGAGAACGCAGGATGTGCTCAAGGGTAGG
CTCGTCCTCGAGGATGATTTCGAGTGGTCTTTACCTTCGGTGAGCCCGAGCTCGGATCAG
AGTGGTGCCAGGGGCAAGCTGAAGTACATAGGGGGGGTCGACATTAGCTTCCTCAAAGAA
GACCCGTCTACGGCGTGTGCTGCGGCGGTGGTTCTGGATGCCGATACCTTGGGAATTGTT
CACGAGGAGTTCGATGTTGTCCGAATGCAAGTTCCGTATATCGCCGGTTTTCTTGCTTTC
AGAGAGGCCCCCATTCTTCTTGGTCTCCTACAGAAGATGAAGATCAATGCTCATCATTTC
TACCCTCAGGTTTTGGTTTAGCATGTCATCTCGGTGTCCTTGCAGACCTGCCAACCATCG
GATAGCTTGGCAGTTAGTTCGTGTTACTATCGACCGAGGCTTTTTAGCAGGAATTACTTG
GAATTACTTGGCTCTGGAAAGCTTCCTGGAAGTGATGGTGTAGTGTTGGAGATTAAAATC
ATGTAGTACTGCAGTTTCAATGATGTTATGTTACTTGATTTTTATTAGATGCTTATGCTT
ATAGCACCTTGTAAATATGCTTGTGATGTTTTGATACTAATTTTGCTTTTTGAAATCAGA
CCAGATTGTTGCAAATTTGTATTGTCTTGTTAAATGAATATAATTACATGTCTTGTTGTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_19243 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45330.1	206	8e-52	protein\|endonuclease V, putative, expressed
Brachypodium v1_2	Bradi1g31767.1	271	1e-58
Arabidopsis v10	None