- Probe CUST_40811_PI390587928
- Source Contig U35_19244
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40811_PI390587928 | Hv_44K_v2 | AGTTCGATGTTGTCCGAATGCAAGTTCCGTATATCGCTGGTTTTCTTGCTTTCAGAGAGG | 535 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.527 | 0.776 | 1.032 | 2.050 | 0.787 | 1.304 |
| Raw | 17.317 | 41.539 | 45.928 | 154.551 | 20.637 | 36.007 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73320.5 | 1251 | 2e-24 | 584 - 643 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_73320.1 | 1159 | 2e-24 | 644 - 703 | 100 | 60 / 60 | plus | ABC11195 |
| MLOC | MLOC_73320.6 | 950 | 2e-24 | 446 - 505 | 100 | 60 / 60 | plus | ABC11195 |
| MLOC | MLOC_73320.4 | 1231 | 2e-24 | 591 - 650 | 100 | 60 / 60 | plus | ABC11195 |
| MLOC | MLOC_73320.2 | 1287 | 2e-24 | 644 - 703 | 100 | 60 / 60 | plus | ABC11195 |
| MLOC | MLOC_73320.3 | 1375 | 2e-24 | 820 - 879 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_48812.5 | 1162 | 8e-25 | 506 - 565 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48812.4 | 1104 | 8e-25 | 448 - 507 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48812.3 | 1144 | 8e-25 | 448 - 507 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48812.2 | 1148 | 8e-25 | 492 - 551 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48812.1 | 1235 | 8e-25 | 539 - 598 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC11197 | 605 | 3e-25 | 536 - 595 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC11196 | 587 | 3e-25 | 447 - 506 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19244 | 605 | 3e-25 | 536 - 595 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19243 | 1036 | 1e-23 | 548 - 607 | 98 | 59 / 60 | plus |
Contig Sequence (605 bp)
>U35_19244 605 Hv_44K_v2 CGCCGGCACCGACGGGGCGCCCCCGCCGTGACAGGTGAGAACCGCGGCGCGTTTCTCGCT GCTTGCTTCGCCCGTCCGTTATCCCGCCGGTCCTAACCGGAAGCCACCGCGCCGCGTAGG CGCGCGCGTAGCTGCTGCATAAGCCGTCGATTTCCTCAATCCCCAGCAGCGCTTGCTACC GAATCGCCCGATCCAACTTGAAATTCCTAGGTTTCCGTCTCCCCCCGAGAGCTCCGAACC ACCGTGCGGGCAGGGACCGGAAGGGGGATGGATAGAGGAGGAGACGGCTCTGATCTGGAG CTACAGAAGCAAGAATGGGCGAGAACGCAGGATGTGCTCAAGGGTAGGCTCGTCCTCGAG GATGATTTCGAGTGGTCTTTACCTTCGGTGAGCCCGAGCTCGGATCAGAGTGGTGCCAGG GGCAAGCTGAAGTACATAGGTGGGGTCGACATTAGCTTCCTCAAAGAAGACCCGTCTACG GCGTGTGCTGCGGCGGTGGTTCTGGATGCCGATACCTTGGGAATTGTTCACGAGGAGTTC GATGTTGTCCGAATGCAAGTTCCGTATATCGCTGGTTTTCTTGCTTTCAGAGAGGCCCCC ATTCT
Homology of Contig U35_19244 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |