barSeed - Barley Seed Development Database

Probe CUST_4080_PI390587928

Source Contig U35_16798

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4080_PI390587928	Hv_44K_v2	GTGTAGCTACCCCGACGTATCTGTATCTGAAATTCTGAATAAATGCAGTAATAATGAAAA	474	GeneList: lightgreen MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.059	0.293	0.595	2.445	7.512	17.832
Raw	14.352	122.858	205.939	1361.669	1393.584	3601.217

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64544.1	786	7e-23	586 - 642	100	57 / 57	plus	ABC06042 ABC06043
JLOC1	JLOC1_42394.1	824	4e-23	586 - 642	100	57 / 57	plus
Harvest21	ABC29306	109	3e-25	42 - 101	100	60 / 60	plus	ABC29306
Harvest21	ABC06043	560	1e-23	471 - 527	100	57 / 57	plus	ABC06043
Harvest35	U35_16798	542	3e-25	475 - 534	100	60 / 60	plus

Contig Sequence (542 bp)

>U35_16798 542 Hv_44K_v2
CCATCTTTGCACAAGCCACTAGCTCACTAGTCACTACTCACTACTACCAGCCGATCTACA
TTTCTTCGTCAGAGTTCCAGAGACGCCATGAAGTACTTGGGGCAGCTGGTGGTGGCACTC
CTGGCCTTCTCGGCGGTGGTGCTGATGATGGCGCCGGCCGGAGCCGAGGCAGCGACCTGC
AACGCGCTGCAGCTCACCCCGTGCGCGGGGGCTATCATCGGGAACGCGGCGCCCACGGCG
TCGTGCTGCAGCAAGATGAGGGAGCAGAGGCCGTGCATGTGCCAGTACGCGCGCGACCCC
AACCTGAAGCAGTACGTCAACTCCCCCAACGGCAAGAAGGTCCTGGCCGCCTGCAAGGTG
CCCGTGCCATCCTGTTAAATCGACGCATATGGTCAGAGATGAGAGAGCAGAGCTGGTGGC
CTCCCTCTCTGGACGCTGCATGTGTTGATGTGTGAGTGTGTTCGGTTGCCGTGTGTGTAG
CTACCCCGACGTATCTGTATCTGAAATTCTGAATAAATGCAGTAATAATGAAAAAAAAAA
AA

Homology of Contig U35_16798 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None