barSeed - Barley Seed Development Database

Probe CUST_40808_PI390587928

Source Contig U35_19247

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40808_PI390587928	Hv_44K_v2	CTGAGCCAACGTAGCTTGTTGCTCGTACAATGAGATGAACATATCCTTCTGTTTAAAAAA	1235	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361958	1822	3e-21	1704 - 1757	100	54 / 54	plus	ABC11698
JLOC1	JLOC1_44308.1	1435	2e-21	1159 - 1212	100	54 / 54	plus
Harvest21	ABC11698	1306	1e-23	1236 - 1295	98	59 / 60	plus	ABC11698
Harvest35	U35_19247	1306	3e-25	1236 - 1295	100	60 / 60	plus

Contig Sequence (1306 bp)

>U35_19247 1306 Hv_44K_v2
GGCGGGAGGGGGGACTCGCCGTACCAGGGCTACGACGTGCAGCGCCTGGCCAGGTGGGTG
GAGCACGCGCTGCCCTTCTCCCTGCTCCTGCTCGGCGTCTTCATCCGCCAGCACCTGCAA
GGTTTCTTCGTTATGATCTGGATTGCCGCTGTCATGTTCAAGTCCAATGATATCTTGCGC
AAGCAGACCGCCCTCAAGGGGGAGAGGAAAATGCCAATGCTTATCGGGATTGTAATAGTA
TTCACCATTCATGTGTTTGGAGTCTACTGGTGGTACAGGAATGATGACCTTGTTAGACCT
TTGGTGATGCTTCCTCCAAAAGAAATACCACCATTCTGGCATGCTATATTTTTCATCGCG
GTGAATGATACAATGGTCCGGCAAGCTGCTATGGTGGTTAAGTGTGTGCTGCTCATGTAC
TACAAGAACAGCAAAGGGCGTCACTATCGTAGACAGGGCCAAATGTTGACAGTTGTGGAA
TATTCCCTACTTCTGTACCGTGCGTTGTTGCCGGCTCCTGTGTGGTATCGTTTTTTCCTG
AACAAGGAATATGGAAGTCTTTTTTCATCTTTAACAACTGGATTGTACCTTACTTTCAAG
GTGGCATCAATGGTGGAAAAGGTTCGATCACTTTTGGCTTCAGTGAATGCGCTGTCTCAT
AAGGACTTGCATTATGGTTCACATGCAACAACTGAGCAGGTTCTTGCTGCTGGAGATCTG
TGTGCTATATGCCAAGAAAAGATGCATACTCCCATCCTCCTACAGTGTAAACATATCTTC
TGCGAAGACTGTGCCTCCGAATGGTTGGAGCGGGAGCGGACATGCCCGTTATGCAGGGCG
CTGGTGAAGCCAGGGGACATCCGGTCATTCAGCGATGGTTCAACGACCCTCTTCTTTCAG
CTCTTCTAACAAGAAACAAGAAGTGCTAACCTTCGGCCTGCAGATGTTGGATCGCCCCTT
GTTACTCTCCATCAGCCTGCCGTGTGCTGAGACTTGTTCCAGTCCAGGTCCTTTGCCGTC
ACTTCGTGACAAGTAGTAGGTGCCGTGGGTGTGCATATTACCCTGTATAGGTCTTCGCGG
GATTCTCCATCACGCAAAAAAGAGGGGAATGATATGAGGAGATAACTGAATCTATAGAGG
TGAATTTCCATTAGCATGTGGCTGGGTGGGTGCTGCCATATCTGCAAAATTCAGAATTGA
CCTTATACGAGATAACAAATGTTAACTCTTGACTCCTGAGCCAACGTAGCTTGTTGCTCG
TACAATGAGATGAACATATCCTTCTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19247 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g25180.1	464	0.0	protein\|zinc finger, C3HC4 type family protein, expressed
Brachypodium v1_2	Bradi2g34430.1	405	0.0
Arabidopsis v10	AT5G01960.1	426	2e-174	RING/U-box superfamily protein \| chr5:370811-372775 FORWARD LENGTH=426