barSeed - Barley Seed Development Database

Probe CUST_40806_PI390587928

Source Contig U35_19248

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40806_PI390587928	Hv_44K_v2	TATACTCTCATGTAATTGCTGCATTGCATACGTACTTTAATCGGGGTTTTGTAAGCTAAA	1197	GeneList: paleturquoise MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.926	5.800	1.076	0.725	0.320	0.285
Raw	184.724	197.714	31.957	38.445	3.257	3.167

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67740.1	1394	2e-23	58 - 115	100	58 / 58	minus	ABC10807
JLOC1	JLOC1_44753.1	1383	1e-23	47 - 104	100	58 / 58	minus
Harvest21	ABC10807	776	3e-25	703 - 762	100	60 / 60	plus	ABC10807
Harvest35	U35_19248	1271	3e-25	1198 - 1257	100	60 / 60	plus

Contig Sequence (1271 bp)

>U35_19248 1271 Hv_44K_v2
CTCGTCGCCCTGTTTCATATCCGGACGAGCCAAACTTCCCAAGAACACCAGAGGGGAGCC
ACACAGACGTTGAAACTTGCAACAATGTCACTCCCCGGCGCTCTCACCGCGAGCTCCTTC
GCCGTCCTCCTCCTCCTCGTCCTCTCCACGTGGCCGACATGCCACGCCACCCACAACATC
ACCGCCATCCTCGCGGCGCGCCGGGACATGTCCGAGTTCAGCCGCCTGCTCACGACGACG
GGCCTCGCGGACGAAATCAACGAGCGCAACACCATCACAGTGCTCGCGGTCGACGACGCG
GACATGGCTCCGCTCAAGGCGCGTCATCTCTCGCGGGAGGCGCTCCGGCACGTGCTCTCC
CTGCACGTCCTCGTCGACTACTACGACCATGACAAGCTGCACCGCCTCCCCGGCGGCTCC
GCCGACGTGTCCACCCTGTTCCAGGCCTCCGGCGACGCGCCCGGCAGCGCTGGCATGGTG
GAGATCTCCGAGCGCCGCGGCGGGAGCGTGGCCTTCGTGCCCCAGGACGCCGGCGACGAC
GCGCGCGCCACCAGCGTGCTCTTCGTCAAGCCCATCCACGAGGAGCCTTACAACATCGCT
GTGCTGCAGGTGGGCGCCGTCATGTCGTCTCCGGCCGCCGAGGCGCCCTCGTCGCCCGAG
ACCTCAGCTCCAATCTCAAGGCACAAGAACGCCACCGACGTCGCGCCAAAGACCAAGAAA
GGGACCGGTTCAGCCGATGCCGACGCCGACGCCGACGCGCCTTCGGCGGACGACGGGGAC
GACGAACGAGAGGACCGTGCGAAGAAGAACGGCGCGATCGGCGCGGCTCCCGGCCGGCTA
TCCTTGGCTCTGGCGTTCCTGCTGGCGATCAAGATCGTGGCGCTCGTTTGAAGGTTCCTG
CTGGTTGTGCGTGTTGCGGGTTGCTGTTTGTTGGGTTCCTCGATCTTGTTCCTGCGCGTA
CGTGTCGGTATTATTGGGTATATGGTGAGTGCTTTGATTAATTTGCTAGGTTGTTGATGC
GTTGGAACGTTCTTGTAGTTTCATTTTGTTTGCCAAGAGAGCTTTGCAGGTCTGAGTCCT
GATTCATCTAGTGTGTGTCTAGTCCAGACTCCAGATCTGGTGGTGCTATAAACCGAAATA
CATCTGCCTAGCTTTAGCTAGCTAGAGTACTATTTTGTTTTGATAAATCTTCAGGGCTAT
ACTCTCATGTAATTGCTGCATTGCATACGTACTTTAATCGGGGTTTTGTAAGCTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_19248 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49420.1	267	7e-69	protein\|fasciclin-like arabinogalactan precursor protein, putative, expressed
Brachypodium v1_2	Bradi3g56390.1	401	2e-72
Arabidopsis v10	None