barSeed - Barley Seed Development Database

Probe CUST_4079_PI390587928

Source Contig U35_16799

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4079_PI390587928	Hv_44K_v2	CTGTGGCGTGCACATTTTCATGGCGCTCTTTGTGGTAGTCATCAATTGTTATAAACTAGA	589	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.955	2.073	0.662	0.894	1.238	1.102
Raw	4.072	17.634	2.939	9.918	3.200	3.254

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46285.1	955	2e-24	814 - 873	100	60 / 60	plus	ABC06042 ABC06043
JLOC1	JLOC1_29980.1	811	8e-25	703 - 762	100	60 / 60	plus
Harvest21	ABC06042	674	3e-25	585 - 644	100	60 / 60	plus	ABC06042
Harvest35	U35_16799	679	3e-25	590 - 649	100	60 / 60	plus

Contig Sequence (679 bp)

>U35_16799 679 Hv_44K_v2
ATCTGAAGCCATACTTGCAGAGGCCACTAGCTCACTACGTACGAGTCGATCAATCTGTTG
TTTCAGCGAGACACCATGAAGTACTTGGCCCAGCTGGTGGTGGCGCTCCTGGCCTTCTCG
GCAGTGGTGCTGATGGTGGCGCCGGCGGGCGCGGAGGCGGCGACCTGCAACGCGCTGCAG
CTGACCCCGTGCGCGGGGGCCATCATGGGGAACGCGGCGCCCACGGCGTCGTGCTGCAGC
AAGATGAGGGAGCAGCAGCCTTGCATGTGCCAGTACGCGCGCGACCCCAACCTCAAGCAG
TACGTCGACTCCCCTAACGGCAAGAAGGTCATGGCCGCCTGCAAGGTGCCCGTGCCCTCC
TGCTAGATGGACGCATATATGATCGATCCATACGGGAGAGCGCAGCGCGCACGCGGGCCT
CTCTGTCCTCTCGCTGCATGTTTCATGTGTGTTCATGTGTCAGTGTTTCCCAACACAATC
TAGCTACCCTGACGATGTATGTGGAGTTGTGGACCGATGTGTATCTAAATTTCTGAATAT
ACGCAATAATGGTGATGTATCCAGCTATATGTAATTTATATGTTTCTTCCTGTGGCGTGC
ACATTTTCATGGCGCTCTTTGTGGTAGTCATCAATTGTTATAAACTAGANACAATTTCCA
TGAAAAAAAAAAAAAAAAA

Homology of Contig U35_16799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None