barSeed - Barley Seed Development Database

Probe CUST_40798_PI390587928

Source Contig U35_50631

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40798_PI390587928	Hv_44K_v2	TGTTAACTTTGTTAAGTGGAAACAGACCTGAGAATAAATTCCATCGCCCCTTTGTTGTTC	331	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251906.1	1512	2e-24	1438 - 1497	100	60 / 60	plus	ABC04240 ABC04242
MLOC	MLOC_12760.1	4125	2e-24	1626 - 1685	100	60 / 60	minus	ABC04240 ABC04242
JLOC1	JLOC1_8573.2	3554	8e-25	1540 - 1599	100	60 / 60	plus
JLOC1	JLOC1_8573.1	3222	8e-25	1208 - 1267	100	60 / 60	plus
JLOC1	JLOC1_8572.5	4160	8e-25	1869 - 1928	100	60 / 60	minus
JLOC1	JLOC1_8572.3	4198	8e-25	1907 - 1966	100	60 / 60	minus
JLOC1	JLOC1_8572.2	3885	8e-25	1594 - 1653	100	60 / 60	minus
Harvest21	ABC52883	391	3e-25	332 - 391	100	60 / 60	plus
Harvest21	ABC04242	628	3e-25	523 - 582	100	60 / 60	plus	ABC04242
Harvest35	U35_50631	391	3e-25	332 - 391	100	60 / 60	plus
Harvest35	U35_1114	1758	3e-25	1503 - 1562	100	60 / 60	plus

Contig Sequence (391 bp)

>U35_50631 391 Hv_44K_v2
TTCATCCACGACATCGGGGAGAAGATCGAGGAGGCGGTGGGGTTCGGCAAGCCCAGCGCC
GACGTCGCCCGGATCCACGTGCCCCACATCGGCCTCCACCGCGCCGACGATGACGAGGAG
TGAAGTGCTGTTACTAAACATACAAGATAGTTAAACAGGGCGCAAGGGAGGATGCTGCAA
GGGGATGCCTACCTATACCCTTAGCACCAGCTGAACTCTCGCTCTAGCTCATGGTATCTT
TGTTGATTGTGTCGTCCGAACATCGTCCGTGTTTTTATGCTTCGGTGCTCAGTGTTCGTT
GTGGGAACCCATCCAATGTGTATTCTTTCCGTGTTAACTTTGTTAAGTGGAAACAGACCT
GAGAATAAATTCCATCGCCCCTTTGTTGTTC

Homology of Contig U35_50631 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None