barSeed - Barley Seed Development Database

Probe CUST_40797_PI390587928

Source Contig U35_24369

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40797_PI390587928	Hv_44K_v2	TCATAAGAAGCATAGCGTCTTGATGATTTCTGTTCACTACTTACTCAGTACTTTGTTGTA	553	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.121	0.122	1.227	2.645	1.502	0.809
Raw	3.069	5.929	72.975	240.188	47.895	28.825

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251252.1	1514	2e-24	1380 - 1439	100	60 / 60	plus	ABC19099
MLOC	MLOC_13655.2	732	2e-24	599 - 658	100	60 / 60	plus	ABC19099
JLOC1	JLOC1_9261.1	3043	8e-25	1121 - 1180	100	60 / 60	plus
Harvest21	ABC19099	686	3e-25	74 - 133	100	60 / 60	minus	ABC19099
Harvest35	U35_24369	686	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (686 bp)

>U35_24369 686 Hv_44K_v2
CAGGGACAGACAAGGTAATTGATGGCAAGATCTCAGAGGAAGGGATCAACTTCAAACTGG
GGCGTGATCTGCCGGAAAAGATTGAAAGCCGCATAGAAGGGTTCTGCAGGATACTTATGG
ACAAGGTTGGGATAAAGAAGTTCAATGATGTTTTCTGGGCAGTGCATCCCGGTGGACCAG
CAATATTAAACAGGCTGGAGGTTTGTCTTGAACTTGATCCAGATAAACTCAAGATCAGTA
GAAAGGCCTTGATGAACTATGGGAATGTGAGCAGCAACACAGTCTTCTATGTGCTGGAGT
ATTTGAGGGATGAATTGAAGAAAGGGACAATAAGGGAAGAGTGGGGATTAATCTTGGCTT
TTGGCCCAGGCATCACATTTGAAGGGATGCTAGTTCGGGGCATTAACTGAAACTGGAAGG
GATCCAAGTAGGATACTACCAGATACATGGAAAGATCACAAACAAGCTTTACATGGCACA
ATACCATTTCGCAATTATAATTATATAGTGTAAGAATAGCAGTTCGCGATTATAATTATA
TACTATAAGAATATCATAAGAAGCATAGCGTCTTGATGATTTCTGTTCACTACTTACTCA
GTACTTTGTTGTATTTTATGCTTTATGCTATCAATTATCAAACAATGTCAGTTGCTCGAG
TTTGTTCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24369 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34360.1	390	2e-85	protein\|stilbene synthase, putative, expressed
Brachypodium v1_2	Bradi3g29230.1	387	6e-86
Arabidopsis v10	AT1G02050.1	395	1e-57	\| Symbols: LAP6 \| Chalcone and stilbene synthase family protein \| chr1:359164-360441 REVERSE LENGTH=395