barSeed - Barley Seed Development Database

Probe CUST_40795_PI390587928

Source Contig U35_50633

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40795_PI390587928	Hv_44K_v2	TAGATGTTGGAGTGAAGTCGTTGAATTTCTATAAAGATTACTTTGACACTCCTTATCCAC	398	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358827	2939	2e-24	820 - 879	100	60 / 60	plus	ABC05018
MLOC	MLOC_12830.2	2514	2e-24	779 - 838	100	60 / 60	plus	ABC05018
MLOC	MLOC_12830.1	1796	2e-24	779 - 838	100	60 / 60	plus	ABC05018
MLOC	MLOC_12830.3	1498	2e-24	811 - 870	100	60 / 60	plus	ABC05018
JLOC1	JLOC1_8629.2	1569	8e-25	603 - 662	100	60 / 60	plus
JLOC1	JLOC1_8629.1	1717	8e-25	751 - 810	100	60 / 60	plus
Harvest21	ABC52888	461	3e-25	399 - 458	100	60 / 60	plus
Harvest35	U35_50633	461	3e-25	399 - 458	100	60 / 60	plus

Contig Sequence (461 bp)

>U35_50633 461 Hv_44K_v2
GATGGACTTCGACGGCATTCTCAACGACCAGATGAGAGGCTTCTACAGGAGTAAGTACCA
GTTTAAGGGGAAGGAGAAAAACATGGCGGTAACGCAGTTTGAGTCCGTGGATGCACGCCG
GTGCTTCCCCTGCTGGGATGAGCCCGCATTCAAGGCTAAGTTCAAGCTAACACTTGAAGT
TCCATCTCAGCTGGTAGCACTGTCCAACATGCCAGTAGCTAACGCGACATTTGCTGGTCC
CATCAAAACTGTGCGTTACCACGAATCACCACCTATGTCAACTTATTTAGTGGCCATAGT
TGTCGGTATTTTTGAATATGTAGAGGGTATGACATCAAAAGGCACGAGAGTTCGTGTGTA
CACTCAAATTGGTAATAGTAACCAAGGGAAGTTTGCACTAGATGTTGGAGTGAAGTCGTT
GAATTTCTATAAAGATTACTTTGACACTCCTTATCCACTCC

Homology of Contig U35_50633 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g19800.1	504	1e-86	protein\|aminopeptidase, putative, expressed
Brachypodium v1_2	Bradi4g28767.2	877	4e-88
Arabidopsis v10	AT4G33090.1	879	4e-65	\| Symbols: APM1, ATAPM1 \| aminopeptidase M1 \| chr4:15965915-15970418 REVERSE LENGTH=879