- Probe CUST_40791_PI390587928
- Source Contig U35_50636
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40791_PI390587928 | Hv_44K_v2 | AAGAAGCTAGGATCCTTCACAAGAATTTCTTCTACTGTTCAGACAGCTATGGAGGAGGCT | 575 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.544 | 0.634 | 1.519 | 2.299 | 1.011 | 1.230 |
| Raw | 57.442 | 105.344 | 220.624 | 531.769 | 85.590 | 109.147 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357540 | 2389 | 2e-24 | 1295 - 1354 | 100 | 60 / 60 | plus | ABC01471 |
| MLOC | MLOC_58175.2 | 2098 | 2e-24 | 679 - 738 | 100 | 60 / 60 | minus | ABC01471 |
| MLOC | MLOC_58175.1 | 2582 | 2e-24 | 850 - 909 | 100 | 60 / 60 | minus | ABC01471 |
| JLOC1 | JLOC1_37769.1 | 2694 | 8e-25 | 1416 - 1475 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52895 | 635 | 3e-25 | 576 - 635 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01471 | 2369 | 3e-25 | 1102 - 1161 | 100 | 60 / 60 | minus | ABC01471 |
| Harvest21 | ABC01468 | 2006 | 3e-25 | 1205 - 1264 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50636 | 635 | 3e-25 | 576 - 635 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14423 | 2491 | 3e-25 | 1325 - 1384 | 100 | 60 / 60 | plus |
Contig Sequence (635 bp)
>U35_50636 635 Hv_44K_v2 ACCAGCGCATGCTCCACCTGCTCTACGTCGACGACCTGCTCGCCGCCGTCCGCAGGGACT TCTCCCAGATCTACAACCCCAACGATGGGGCCTTCGATGTAAATACCTTACGTAAGAAGA CAGGAGGAAAGAAGGGCGGTGGCGGCGGCAAGAAGATTGATGTGAAGAAGGTGGCCAAGA CCGAGCCCAAGAAGGCCGTCAAGCAGATGAGGGTCTGGGACGACAAACCGCCCAAGAACG AGAAGCTGGACTTCACGGACCCAGCTGACGAGAGAGGGGATGAGGTGATAGAGAAGGTGC TTACCAACCAGGGGGACAGCATGATGGATAAGGATGAGGATCTGAGCAGCGATAGCGAGG ATGAAGAGGAAGAGGAAGAGCAGAATGCTGAGGCTGGCCAGAAGAAGAAGGGCTGGTTCT CCTCCATGTTTAAGAGCATTGCAGGTAACAGCGTACTTGAGAAGTCTGATCTGCAACCTG CACTCAAAGCTCTTAAAGATAGACTGATGACAAAGAATGTGGCTGAAGAAATAGCGGAAA AGCTTTGTGAATCAGTAGCAGCTAGCCTTGAGGGCAAGAAGCTAGGATCCTTCACAAGAA TTTCTTCTACTGTTCAGACAGCTATGGAGGAGGCT
Homology of Contig U35_50636 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g37444.6 | 516 | 1e-68 | protein|signal recognition particle receptor, putative, expressed |
| Brachypodium v1_2 | Bradi1g78220.1 | 624 | 8e-77 | |
| Arabidopsis v10 | None |