barSeed - Barley Seed Development Database

Probe CUST_40787_PI390587928

Source Contig U35_50638

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40787_PI390587928	Hv_44K_v2	GTGGTACTACCGTAGCTGTATACTGGGATGTGATGTATATTTATTTTCCCTACATCATAC	518	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68002.1	1816	2e-24	100 - 159	100	60 / 60	minus	ABC31768
JLOC1	JLOC1_44956.1	1808	8e-25	1655 - 1714	100	60 / 60	plus
Harvest21	ABC52898	581	3e-25	519 - 578	100	60 / 60	plus
Harvest21	ABC31768	586	3e-25	79 - 138	100	60 / 60	minus	ABC31768
Harvest35	U35_50638	581	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_3157	1398	3e-25	1261 - 1320	100	60 / 60	plus

Contig Sequence (581 bp)

>U35_50638 581 Hv_44K_v2
ACATTTGAGTTTGATGTTGCACTAGGGTATGTTTCTGGGTGGTGGGAGAAGGGGAGTGGG
CAAAATGGCGGCGGTCCAGGTGGTAGTGGGTGCTGTTCAGGATCAGGAACTTGTGGAAAT
GGTGATTGTAGTAATGGTGATTGTGGTGGAGATGATTTTGGAGGGGAGTACCCTATGGAT
TACTATTCACAGGATGGGGGTGATTGGAATGGCTGCTACATGAAGAAGAAGCCCTCCACC
GGCGAGAGAAAGCCGCGAGTTCGAATTGGCAGCAATGTCCAAGTCGAGGAGAAGCAGTGA
AATGGAACATCTCTGAGGTTTACTGAAGCCAAATGAGATATCAAGAGCCTTCATGGCTCC
AGAAGTTTTGACACCAGAATTCAACCTTGGCATCCGTCATTCTTCGCGCAATGCAACAGA
GGAACTTTGCCAGTGCCGACGGGCTTTGCTTAAGCATCAAAATACCCTAAGCTCCTTTAT
CAAACAAGCCAATGTACAATTTGTTCACTGCCGTGGTAGTGGTACTACCGTAGCTGTATA
CTGGGATGTGATGTATATTTATTTTCCCTACATCATACTGT

Homology of Contig U35_50638 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None