barSeed - Barley Seed Development Database

Probe CUST_40783_PI390587928

Source Contig U35_36348

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40783_PI390587928	Hv_44K_v2	GAAATCAGATGCTCAATAAAGACTAGTATTTCCTAATGGCATTGCGCTCTCCTATCTGGA	812	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.000	1.561	1.092	0.966	0.487	0.541
Raw	619.190	1509.190	919.791	1292.493	224.229	275.958

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371021	2819	6e-24	1275 - 1333	100	59 / 59	plus	ABC07437
MLOC	MLOC_68759.2	1824	6e-24	1407 - 1465	100	59 / 59	plus	ABC07437
MLOC	MLOC_68759.3	1747	6e-24	1392 - 1450	100	59 / 59	plus	ABC07437
JLOC1	JLOC1_45520.1	1706	3e-24	1392 - 1450	100	59 / 59	plus
Harvest21	ABC07437	1487	1e-24	1341 - 1399	100	59 / 59	plus	ABC07437
Harvest35	U35_36348	875	3e-25	813 - 872	100	60 / 60	plus
Harvest35	U35_3420	1487	1e-24	1341 - 1399	100	59 / 59	plus

Contig Sequence (875 bp)

>U35_36348 875 Hv_44K_v2
GGCGAATTGGGCCCTTTTCATAATGCTCGAGCGGCCGCTGCGATTCTCAGACCGCACGAG
ACGACGGACAAACGGCCTGCGAACCCGGCCAATCAGTCTCTCATCCGCTTCAATTCGCAA
TGGACCGCGTCGAGGTGGAGTCAGTTTGCTTTGTATCTGATACTCTTCTTTGAGAGACTG
TCCAAGTGCTCAGACGCACTGTTGCAGTTGCAGCTGGAAGTGATAGGTGACGAGGATAAA
CAATTGGCCCGGGCCGCCGGGGCCATCTCCGAGGGGCAGATCAAAACCATGATCCATAAG
CTTTGCAGTGGCCTGCCTTATTTAATGGGTGAGGTCGATAAGCAGGGGCGGCCTCTCTCG
GTACCGGAGCGGCAAAGCGTGATTATGTACCATCTCGTTTGGCCACTCTCAGTCGTCATT
GTGAGCTCTCATAGCACCCTGGAACAAGTAGAGGACGCGCAAACGAGGCTGAATGCAATC
AGGGATATGTACGGCATTAGACTCGCTTATTTTGCCCCGGGTTTAGCAAGGGATTTGATG
GCTTAGACCTAGTGCGGTCAGGGACAGATACCAACGGCAAGAATAGATGAGCACAGACAG
CATCAACCCTATAAGGATCTCCAGGGTTCCCGGCGCATCCAAACAGTTGAAAGCAATACG
ATTGAGCGGCCGCTATCAGCTTACCCGAAGGTCTGCATAGGCGGTGTACTCTTGATCGAA
CATTCTGCAGGTGGGCCAATGAGCCTCTTGGAAGTGTGTTGAAGGCGTGTNGTGTGTAAT
TATTGTATATGCCATATGCCTTGAAGTGCGCTGAAATCAGATGCTCAATAAAGACTAGTA
TTTCCTAATGGCATTGCGCTCTCCTATCTGGAATT

Homology of Contig U35_36348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None