barSeed - Barley Seed Development Database

Probe CUST_40775_PI390587928

Source Contig U35_48322

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40775_PI390587928	Hv_44K_v2	CAGTTCCCGTAACGCTGTAGCTCTTTTTTATTTTTGACGGGGACGCTGTAGCTCTTCTTT	115	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.116	1.464	1.491	1.083	0.502	0.560
Raw	879.303	1807.812	1607.557	1780.783	296.986	365.265

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (652 bp)

>U35_48322 652 Hv_44K_v2
ACTGCATATCTTAATTCTCAACTGGAGCATCAGTTACAAATTAACGCTAGATTTTTCAAG
TAGTGCAATTTACAAACGAGTGTAACAGTGGGGCAAACTCATATCAATGACTTGTAAAGA
AGAGCTACAGCGTCCCCGTCAAAAATAAAAAAGAGCTACAGCGTTACGGGAACTGGAAAA
ATACTACAAAGAAAAAGCTGGTTCAGAGCATCCTCGTAGTATTCCCGACCCTACACTCAC
ATGTGCATACGCTTCTTGATTCTCTGACCACGCGCCGCGACCGCTGAATATGCAGCTTGA
TGTTCACCAGCTTGCCAGCAATCATTCTCCATGTAAGGTCTTCTGGTCCAAGGGGCTGAG
CAGGACTCGAATAAAGAAAATGCCTCGAGTACTTGAGAAGATTGGATTGCATCTCCCTGA
CTCTTTTGCCATCGACGCCTCTTAGGTACTTCACCAGCCAGCCAGGTTGCACAGCATCAG
TTGATGAAACAAACAATGCTATCTTACTGTAGTCAAGTATTCCTTCAAAAGGGAGCTCTA
GCTCATCGCTGATTATAACTGGGATACATCCACTAACAATTGCATCAAACAGGCGAGCAG
AAGATGGAGTATCCCCAGCAGGATTCAAGCAAAAGAGAGACTTGCGCATGCC

Homology of Contig U35_48322 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59630.1	500	3e-82	protein\|exostosin family domain containing protein, expressed
Brachypodium v1_2	Bradi2g53000.1	496	7e-85
Arabidopsis v10	AT5G16890.1	511	1e-65	Exostosin family protein \| chr5:5551664-5554741 FORWARD LENGTH=511