barSeed - Barley Seed Development Database

Probe CUST_40774_PI390587928

Source Contig U35_12394

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40774_PI390587928	Hv_44K_v2	GTGTCTCCTTCTCAGATTGCAATGATAAGTGCTTTGATCAAAAGAAGACCACTTTATATT	942	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.816	2.279	1.179	0.778	0.262	0.208
Raw	129.494	249.045	113.329	123.774	14.975	12.261

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65713.1	1052	7e-23	26 - 86	98	60 / 61	minus	ABC21359
JLOC1	JLOC1_43258.3	1051	4e-23	941 - 1001	98	60 / 61	plus
JLOC1	JLOC1_43258.2	1072	4e-23	962 - 1022	98	60 / 61	plus
JLOC1	JLOC1_43258.1	771	4e-23	661 - 721	98	60 / 61	plus
Harvest21	ABC21359	1049	3e-25	48 - 107	100	60 / 60	minus	ABC21359
Harvest35	U35_12394	1049	3e-25	943 - 1002	100	60 / 60	plus

Contig Sequence (1049 bp)

>U35_12394 1049 Hv_44K_v2
GCACGAAAAAGCGTATGGCGATGGACCAGGAGGGCACCACAGCCCACCAGCGGCACGGCG
GCGGCTCCATCACCGACGACGCCCTCTCCCTGTTCGCCTCCCGCCTCTCGCACCACAGGT
TCGGAGACGAGGAGCTCCGGGTACTGGAGGCGGCGCTCTCCACCGGGGGCGATGTTGCCG
CGCTGCTCAGCACGCGCTCGGCAGCCCGGAAACTTCTGCGGGAGAGCGTGGCCGGGGCGT
GCGCCGCAGCTGCGGTCGAGGGGGACGGGGCGAGGCTCTCCGTCGCCGACTTCTTCGCGC
GCGCCTTCGCCCTCGCGGGAGATGTCGAGAGCTGCCTTGCTATGAGATATGAAGCGCTGG
TTCTGCGAGAGGCCAAATACTCCGACGACCTTCAATTGCATGTATTCCATGAAGAATGGT
TAACCTTTGCACATGACTCTCTTGATAATGGGTTCTACACCATTGCTTCCAAGGCTTTTG
CAAGTGCTCTTGTGCACATTCATCCCAGCCACTTGAACGCTACTAATGCGACACTGAAGA
AGAACAAGGTCAATGATATAAGAGGACTCCAAACCTTGGCCAAGTCATTATCTGCACAGC
GTTCTGTTCAGACACAATCCGCTGAATACATGAAAAGGAAAACTTCAGGCGTTAGTGAAG
AGTGCAATTTACATTCAGAAAAACCGAAGTTACCGGCGAACTTGATGTTTAGGCTGGGGA
TCAAAACAAGGAACACACAAAAACTACTTCTTAGCCGCAAGAGAAACTTAGAAGAGGTTT
GATTTCGAGCATTTATCAGTGTGGATCTCTCCAAGACTGCGAAGAGTGACTTGATCATCT
TTCCAAGCTATTTTGGTACAAAAGGCTACCTAGATAGCTGGGGTTGTTCCTCTCCGTCAT
TAACGTTCCTTCATTAAATACAGTACATCCATACCTCTGTATGTGTCTCCTTCTCAGATT
GCAATGATAAGTGCTTTGATCAAAAGAAGACCACTTTATATTTTTCTCTGTAAGATAACT
ATGTCATGGCATACGTCTTATTATGCAAA

Homology of Contig U35_12394 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g01540.1	219	1e-70	protein\|expressed protein
Brachypodium v1_2	Bradi4g44844.1	258	2e-117
Arabidopsis v10	None