barSeed - Barley Seed Development Database

Probe CUST_40773_PI390587928

Source Contig U35_48323

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40773_PI390587928	Hv_44K_v2	TATCATGATGTTGAGCATGTAAGACCAATCTATGTTACGTTCCAAGATAAAGGCTAGATT	5	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.125	1.168	1.226	0.995	0.382	0.404
Raw	122.513	201.478	183.611	242.360	30.852	36.367

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC49971	649	3e-25	6 - 65	100	60 / 60	minus	ABC49971
Harvest21	ABC19057	684	1e-23	533 - 593	98	60 / 61	plus
Harvest35	U35_48323	649	3e-25	6 - 65	100	60 / 60	minus
Harvest35	U35_24108	778	1e-23	533 - 593	98	60 / 61	plus

Contig Sequence (649 bp)

>U35_48323 649 Hv_44K_v2
TTTAAAATCTAGCCTTTATCTTGGAACGTAACATAGATTGGTCTTACATGCTCAACATCA
TGATATCCATTCTGTCCCGTCAGTATCTCTGTGATTATAACACCAAGGCTATATATGTCT
GACTTGAGTGTAATTTGTCCATTTGTGAGAAATTCTAGTGCCATATACACCCTACATTAA
AATTTATCAAGTTTGATCAGTAAATGAGAAAATGAAATACATGCAAATCACACCACATCG
GGAAAAAAGAGATTATGACTCCCATGAGCCATAGATATGACTTACAAAGTTCCCATCACT
TCGGCAGTAAAAATTTGGGTTTGCTTTTCAATGAAGCGCCTTGAGAGACCGAAATCGGCA
ATTTTCGGGATCATTTTATCATCCAACAATATATTTGTAGGCTTAAGATCTAAGTGGACG
ATACGCCGCTCAACATGGAGATAATGTAAGCCTTCACAGATTTCTTGGATGATCCGATAG
CGCTCTGTCCACTCAAGTACACAAGATACTCCAGTGATATACTTATCAAAACTCCCTCTA
GGTAGATACTCGAAGCAAAGCAACATTTGTCGTACATCTGCCATTACAGACCCTCCCTCA
TGTTCTGACAATATCTGTTCTGGCATCTTCTGCATCAGTCGCATCATTA

Homology of Contig U35_48323 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None