- Probe CUST_40770_PI390587928
- Source Contig U35_12396
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40770_PI390587928 | Hv_44K_v2 | CAGCTGATCGAACTGTGAAGTTTTGGGATCTTGAAACTTTTGAATTGATAGGTTCTGCTG | 612 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.025 | 1.460 | 1.806 | 1.041 | 0.388 | 0.654 |
| Raw | 21.732 | 46.066 | 50.840 | 44.001 | 5.160 | 11.574 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37725.2 | 1933 | 2e-24 | 624 - 683 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_37725.3 | 2024 | 2e-24 | 624 - 683 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_37725.4 | 1623 | 2e-24 | 319 - 378 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_37725.1 | 2095 | 2e-24 | 624 - 683 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_24459.6 | 2097 | 8e-25 | 619 - 678 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24459.5 | 2021 | 8e-25 | 619 - 678 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24459.4 | 2094 | 8e-25 | 619 - 678 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24459.3 | 2021 | 8e-25 | 622 - 681 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24459.2 | 2105 | 8e-25 | 624 - 683 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24459.1 | 2108 | 8e-25 | 624 - 683 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC23636 | 673 | 3e-25 | 613 - 672 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_12396 | 675 | 3e-25 | 613 - 672 | 100 | 60 / 60 | plus |
Contig Sequence (675 bp)
>U35_12396 675 Hv_44K_v2 TGGACCCGGAGAAGCGCGGCTACAAGTTCCAGGAGTTTGTTGCGCACGATGCTGAAGTGA GGTCCTTGGCCATCGGCAAGAAGTCGAGCCGTGTGTTCATTACAGGTGGCAGTGACCGCA ACGTCAACCTGTGGGCAATTGGCAAGCAGACTCCTCTCCTGAGCTTGTCAGGCCACACAA GCTCGGTTGAGGCTGTAGAGTTTGATACAGCAGAGGTGCTTGTGCTTGCTGGCTCATCAA ACGGCTCCATCAAGCTCTGGGACTTGGAAGAAGCTAAAGTTGTGCGGTCTCTCACTGGGC ATAGATCGAGTTGCACTGCTGTTGAATTCCATCCATTCGGCGAATTTTTTGCATCTGGTT CTTCAGATACAGATCTTAAGATCTGGGATATAAAGAAAAAAGGATGCCTTCATACATATA AGGGTCACAGAGGAGCAATTAAATCAATCCGATTTACACCTGATGGGCGATGGATCGTCA CCGGTGGAGAAGATAACATTGTGAAGGTGTGGGATCTGACAGCTGGAAAGCTCTTACATG ATTTCAAGTTCCACAGTGGACAAATCCGATGCATTGATTTTCATCCTCAAGAATTTTTGC TTGCAACAGGCTCAGCTGATCGAACTGTGAAGTTTTGGGATCTTGAAACTTTTGAATTGA TAGGTTCTGCTGGAC
Homology of Contig U35_12396 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g57210.2 | 797 | 6e-152 | protein|katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed |
| Brachypodium v1_2 | Bradi2g51760.2 | 832 | 2e-145 | |
| Arabidopsis v10 | AT1G61210.1 | 1181 | 1e-115 | Transducin/WD40 repeat-like superfamily protein | chr1:22564785-22571555 FORWARD LENGTH=1181 |