barSeed - Barley Seed Development Database

Probe CUST_40766_PI390587928

Source Contig U35_48327

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40766_PI390587928	Hv_44K_v2	ACCTACTTTATATTTAACTATGTGGTAACACTGCTTTATGTTCCCAATAGAGACAACCAG	-1	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13598.3	2693	7e-23	2425 - 2485	98	60 / 61	plus	ABC40789 ABC49979
MLOC	MLOC_13598.4	1245	7e-23	828 - 888	98	60 / 61	plus	ABC40789 ABC49979
JLOC1	JLOC1_9218.2	2348	4e-23	1999 - 2059	98	60 / 61	plus
JLOC1	JLOC1_9218.1	2241	4e-23	1892 - 1952	98	60 / 61	plus
Harvest21	ABC49979	667	1e-23	1 - 61	98	60 / 61	minus	ABC49979
Harvest35	U35_48327	667	1e-23	1 - 61	98	60 / 61	minus

Contig Sequence (667 bp)

>U35_48327 667 Hv_44K_v2
CTGGTTGTCTCTATTGGGAACATAAAGCAGTGTNTACCACATAGTTAAATATAAAGTAGG
TTATACTCAGAAAGGTGGTTGTTGATATATCTAGCTACCCATGTCATTTTGTTGGACATG
CTAAGTTTGTTGAATGCTCTAGCAACTGCAGGATTCTCAACTAGATGAGCATAGTAATGG
GTAAGATGTGCCTCTTCAAATCCAGGGAGATCCATCAAGTTACCCTGAAGATCTTCAGGG
ACATCTGTATCTACGCATTCAGATTTCTCTATAGCTTTGGCAAGGTTATCAAGGCTGGTC
ATCAAATGCATCAACTCATCGTCATTGTTTACCTTGGCCCTTTTCGATGCTTTACTGCTA
GAGGAATCACCATTCTTCCCCCATTCGGGGATTGGAAAAGGCAGTGTAAACTCTTCAACA
CTAGCAGCAAAAGTGTCATTTCCTCCATTGGCAATTTCATTCTCTGTCGCATCTGCAGCA
AGAAGTTCATCCACACTCTTAGCATATACATCAGAAGCCATACCATCACTGAAGATTGTG
GCCATCTCGTGATTGTAACTTGGTGTGTTCAAGAAGTCAGCATCATTGCTGTGATAGTTT
TGATGGTCTTCCCACATTTTGTCAGCAAGGGCTTGTCTGAACTCAACCATGTGCCTATGG
TCATGGG

Homology of Contig U35_48327 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g19470.1	291	3e-55
Arabidopsis v10	None