barSeed - Barley Seed Development Database

Probe CUST_40760_PI390587928

Source Contig U35_24375

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40760_PI390587928	Hv_44K_v2	GCCCCGCTTGGTTCACGTGTATTTATATACACTTGTATTTATTTTACAGGTGTATAATAC	728	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248430.1	1313	2e-24	1165 - 1224	100	60 / 60	plus	ABC25131
MLOC	MLOC_59813.1	1449	2e-24	1179 - 1238	100	60 / 60	plus	ABC25131
MLOC	MLOC_59812.1	773	2e-24	503 - 562	100	60 / 60	plus	ABC25131
MLOC	MLOC_59812.2	1343	2e-24	1073 - 1132	100	60 / 60	plus	ABC25131
JLOC1	JLOC1_38948.2	2004	8e-25	1537 - 1596	100	60 / 60	plus
JLOC1	JLOC1_38948.1	1580	8e-25	1113 - 1172	100	60 / 60	plus
Harvest21	ABC25131	829	3e-25	729 - 788	100	60 / 60	plus	ABC25131
Harvest35	U35_24375	829	3e-25	729 - 788	100	60 / 60	plus

Contig Sequence (829 bp)

>U35_24375 829 Hv_44K_v2
CAACAACTCCGCCGGCCCATTGCCCATAGCCACTCCAGACGATCGACCGCGCGCGGGCCG
CCGTACGTACTCGAGCTTGGAATCGAGCATGTCGTCGAGAGCGCCGCCGGTGGAGCTCGA
CTTCCTCGGCCTCCGCGCCGCTGCCCTCGGCGAGCAACGCGGCAAGAACACCGGCTCATC
CTCCTCCTCCTCCTCCTTGTCGTCCATCCGAGGGATGGAGACGAGCGCAATAGCGAGGAT
AGACCCCCAGCTGCTGCGCCGCGTCGTCGTCCCCCGCTCGCCGGCGACGACGGAAGAGGC
GCCTGCGGCTCCCAGTCCCATGACGGTCTTCTACAACGGCTCCGTTGCCATCTTCGATGT
CTCCCACCACAAGGCAGAAGCTATAATGCAGATGGCAAGGGACGTAACGTTGGCAGAAAG
GCGTGACCTTGGCAACAATACACCTGTTGGAAATTCAAGCAAAGACATACCACTGGCAAG
AACAAAGTCGTTGCAGCAGTTCCTCGTGAAGCGTAAAGAGAGGTTGACCCGCATGGGTCC
ATACCATCCCGGCGCCACCACCATCAGCGGCAGCTCTCTTGGTGTGAAGAAGGAAGCGGA
AGCAGCCTAGCTAGCTTCTGGGCTTGACTGATTAGCTTGATGTTCATTTGGTGCTCTTGA
TTATAGGGTATAGCTAATTGTTCCGGTGATTACCGGTGTATATTCATGTGTGTGGAAATG
GAACTAGGGCCCCGCTTGGTTCACGTGTATTTATATACACTTGTATTTATTTTACAGGTG
TATAATACTGGTTTTATTTGATTTTTAACTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_24375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g08650.1	173	6e-55
Arabidopsis v10	None