barSeed - Barley Seed Development Database

Probe CUST_40752_PI390587928

Source Contig U35_50643

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40752_PI390587928	Hv_44K_v2	CAACATTTGCACCTTACAAAGTTGAATGGCGTGTTCTATCCATTGATACTTGCCAGTGGC	355	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5883.1	2409	3e-22	1474 - 1532	98	59 / 60	minus	ABC25993
JLOC1	JLOC1_3814.1	1373	1e-22	743 - 801	98	59 / 60	plus
Harvest21	ABC21712	908	3e-25	356 - 415	100	60 / 60	plus
Harvest35	U35_50643	647	3e-25	356 - 415	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_50643 647 Hv_44K_v2
TTCAGGTCATAGCAACAATAGCTGAAATGTTTTGGGAGCAGACAAAATTTAAGCGGAAAC
GCCAGTCAGCAACAAGGTCCCAACCATCACAAACTTTTGCATCCCAATCAATGGATGATA
TCATCTCGTTTTTGAACAACCAGACATCAGAAGACGGTGTTGATGGCGTGTGCCTTCTTA
TTCACAATATAGATGGACCTGCATTGCGTGATGCTGAATCACAGCAGTGTCTAGCACAAG
TTTCTTGCTGTCCACAAATCCACATTGTTGCATCAGTGGATCATGTCAATGCACCTTTAT
TGTGGGACAAGAAGATGGTGCACACACAGTTCAAGTGGGAGTTGGTACCATGTCCCAACA
TTTGCACCTTACAAAGTTGAATGGCGTGTTCTATCCATTGATACTTGCCAGTGGCGGGCA
TGCACAAACCACAAAAACTGCCCNTTGTTGTTCTTCAGAGTCTGACACCAAATGCACAAA
GTGTCTTTAGAGTTCTTGCTGAATATCAGTTAGCAAATGAAAAAGACGAAGGTATGCCTG
TCAGCAGCTTGTATACCAAATGCCGTGAGCGTTTCCTGGTGAGCAGTCAAGTGACATTGA
ACTCCCACCTGACAGAATTTAAAGATCATGATCTTATAAAGATCAAA

Homology of Contig U35_50643 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08640.1	380	4e-104	protein\|ORC2 - Putative origin recognition complex subunit 2, expressed
Brachypodium v1_2	Bradi1g72310.4	276	2e-106
Arabidopsis v10	AT2G37560.1	363	2e-67	\| Symbols: ORC2, ATORC2 \| origin recognition complex second largest subunit 2 \| chr2:15759568-15761116 FORWARD LENGTH=363