barSeed - Barley Seed Development Database

Probe CUST_40747_PI390587928

Source Contig U35_50647

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40747_PI390587928	Hv_44K_v2	GAACCGGTTATATAATATGTTGTGGATGAAAGTTGTGTACCCTCATATGCTTGTCCACGA	510	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.667	1.590	1.100	0.855	0.330	0.327
Raw	10263.920	15262.213	9290.133	11402.700	1544.770	1682.873

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370822	1178	2e-24	943 - 1002	100	60 / 60	plus	ABC01939 ABC01945 ABC35138
JLOC1	JLOC1_47083.5	2327	4e-23	2064 - 2123	98	59 / 60	plus
JLOC1	JLOC1_47083.4	2398	4e-23	2135 - 2194	98	59 / 60	plus
JLOC1	JLOC1_47083.3	2728	4e-23	2465 - 2524	98	59 / 60	plus
JLOC1	JLOC1_47083.2	2718	4e-23	2455 - 2514	98	59 / 60	plus
JLOC1	JLOC1_47083.1	2464	4e-23	2201 - 2260	98	59 / 60	plus
Harvest21	ABC52921	573	3e-25	511 - 570	100	60 / 60	plus
Harvest21	ABC01945	1086	6e-22	1009 - 1062	100	54 / 54	plus	ABC01945
Harvest35	U35_50647	573	3e-25	511 - 570	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_50647 573 Hv_44K_v2
AGGGTCTGCATGCTTGGTGATGCCCAGCACGTGGGAGAGGCTGAAAAGATTGGTCTGGAT
TCCATGGACGTTGAAGTCTCTGGAAGCCAAGGTGAATGAGACGAAAGCCACAATCAAGTT
CCAGCTCAAGAAGGTGCTGTGCATGGGTGTCGCTGTTGGCAACCTGTCGATGGAGGAGAA
GCAGATCCAGCAGAACATCCAGATGAGCGTCAACTTCCTGGTTTCCCTGCTCAAGAAGAA
CTGGCAGAATGTGAGGTGTCTGTACATCAAGAGCACCATGGGGAAGCCTGTCCGGGTGTT
CTAAGCTCGTGCCCCTGCCCGCCCGTCTATATCGATGCTACCTCCAATACTGGACCTCCT
TACTATGTTCATGCTTAAATATGTCAGTGTCGTGTCGTAGTTTTTATCGAATTTTGCACG
TGTCCTGGTGAATGAAGATGATGAAAGACTGCTGCTGTTTCTCCTAAGTTGCCATTCTGA
TGGAACAATATGCTCATCAAGATCATGCGAGAACCGGTTATATAATATGTTGTGGATGAA
AGTTGTGTACCCTCATATGCTTGTCCACGATGC

Homology of Contig U35_50647 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None