barSeed - Barley Seed Development Database

Probe CUST_40744_PI390587928

Source Contig U35_48332

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40744_PI390587928	Hv_44K_v2	AAATTCTTTTGTGCTATTCTTTTTGCCCATTGTGCAAGAGCTACACTGAGGGACGCCAAT	70	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4908.4	1844	2e-24	1674 - 1733	100	60 / 60	plus	ABC49987
MLOC	MLOC_4910.1	1821	2e-24	760 - 819	100	60 / 60	plus	ABC49987
JLOC1	JLOC1_3114.1	4876	8e-25	2533 - 2592	100	60 / 60	plus
Harvest21	ABC49987	547	3e-25	71 - 130	100	60 / 60	minus	ABC49987
Harvest35	U35_48332	547	3e-25	71 - 130	100	60 / 60	minus

Contig Sequence (547 bp)

>U35_48332 547 Hv_44K_v2
GTCCTATGTGACAAGTGCATTAATGCAGGCCGAGGCATTTGTTCTCTGTACACGCCCTGT
AGCACTCGACATTGGCGTCCCTCAGTGTAGCTCTTGCACAATGGGCAAAAAGAATAGCAC
AAAAGAATTTGTACAAAAAATGGTCAGCATAGAACTGCACTTTTGCAGTTCCAGGCTGTG
CAAATGAAAAAGACTCATCTGACTCTATAACAAACAGGTTTCATGCTGTTGTGCTTCTGG
CTTCCTAACTGCAGTGTTCTGGCAGGAAGCATTTTAGCTTATTTTCCTTCCTGGAATTTA
CGCCGTGCCACCATGGTCCCCCAAGGCACACGTGATACATCATAAATACTGCATCCTGTT
TCTCCCAAAAAATATACCTTTGTTGAAGCAAGTTCATGTTGTTTGCTGCTTCAAATTCCC
ACAGATGCAGACTGTGTAACGTGTGTTACGTCTCATGTCCCTGCCATTAATGTATATTGC
ATTCTGCCATGAACCTTTCCCCATTAGTCATGTATTTTCTCCAGTAGCTCTTGTAATCAT
GTATTGC

Homology of Contig U35_48332 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None