barSeed - Barley Seed Development Database

Probe CUST_40743_PI390587928

Source Contig U35_48335

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40743_PI390587928	Hv_44K_v2	CAAAAATTTATTCTCGGAAGAGGTTGTACACTCTTCTCTTCTCTGGGGCAAACCACACTC	30	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72170.2	1440	2e-24	1300 - 1359	100	60 / 60	minus	ABC00149 ABC00235 ABC00865 ABC36987 ABC38238 ABC39188 ABC48865 ABC51028
MLOC	MLOC_72170.1	1389	2e-24	1314 - 1373	100	60 / 60	minus	ABC00149 ABC00235 ABC00865 ABC38238 ABC48865
JLOC1	JLOC1_48005.1	1772	8e-25	1270 - 1329	100	60 / 60	minus
Harvest21	ABC49990	563	3e-25	31 - 90	100	60 / 60	plus
Harvest21	ABC48865	533	3e-25	322 - 381	100	60 / 60	minus	ABC48865
Harvest21	ABC00865	1659	3e-25	1112 - 1171	100	60 / 60	minus	ABC00865
Harvest21	ABC00356	1440	3e-25	152 - 211	100	60 / 60	plus
Harvest21	ABC00235	1468	3e-25	1273 - 1332	100	60 / 60	minus	ABC00235
Harvest35	U35_48335	563	3e-25	31 - 90	100	60 / 60	plus
Harvest35	U35_47641	533	3e-25	322 - 381	100	60 / 60	minus
Harvest35	U35_38521	374	3e-25	145 - 204	100	60 / 60	plus
Harvest35	U35_119	1408	3e-25	1240 - 1299	100	60 / 60	minus
Harvest35	U35_76	1947	3e-25	1273 - 1332	100	60 / 60	minus
Harvest35	U35_49	1405	3e-25	1157 - 1216	100	60 / 60	minus

Contig Sequence (563 bp)

>U35_48335 563 Hv_44K_v2
AAGGTTTTTTTTAGTTGCCATAATTCCATACAAAAATTTATTCTCGGAAGAGGTTGTACA
CTCTTCTCTTCTCTGGGGCAAACCACACTCCCCTGTATCTTCATGCTTTGGCTCATTTAC
TTGGTGCTGTGCATGTGGCGGATGAGGTCGACCACACGGGTGCTGTATCCCCACTCGTTG
TCGTACCATGAGACAAGCTTGACAAAGTTGTCGTTCAGAGCAATCCCGGCCTTGGCATCA
AAGATGCTGGACCTGCTGTCACCCTGGAAGTCAGTGGAAACAAGGTCCTCATCGACATAA
CCCAAAATGCCCTTGAGGAGGGTGGCACTTTCACCGTCTCGAATCTGGGAGGCCCTTTCG
GAATCAAGCAATTCTGTGCCATCGTAAACCCTCCCCAATCGGCAATCTTGGCTATTGGCT
CTGCTGAGAAGAGGGTGGTCCCTGGAGTTGAGGGCCAATTTGAAGTCGGGTCCTTCATGT
CAGCCACGCTAAGCTGCGACCACCGGGTCATTGATGGCGCCATGGGTGCGGAATGGCTCA
AGGCATTCAAGAGCTACCTTGAG

Homology of Contig U35_48335 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None