barSeed - Barley Seed Development Database

Probe CUST_40732_PI390587928

Source Contig U35_24387

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40732_PI390587928	Hv_44K_v2	TTTGATAGATGTTGTTTCTGGTGCGGGTTCTGTTCCAAGGCTTGAGGAACCACAAAGTGT	731	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78431.3	2672	2e-24	1517 - 1576	100	60 / 60	minus	ABC17426
MLOC	MLOC_78431.4	3039	2e-24	1373 - 1432	100	60 / 60	minus	ABC17426
MLOC	MLOC_78431.1	3409	2e-24	1742 - 1801	100	60 / 60	minus	ABC17426
MLOC	MLOC_78431.2	3286	2e-24	1742 - 1801	100	60 / 60	minus	ABC17426
MLOC	MLOC_6327.4	2337	7e-23	1645 - 1704	98	59 / 60	minus	ABC17426
MLOC	MLOC_6327.1	2597	7e-23	1840 - 1899	98	59 / 60	minus	ABC17426
MLOC	MLOC_6327.2	4033	7e-23	1811 - 1870	98	59 / 60	minus	ABC17426
MLOC	MLOC_6327.5	3442	7e-23	1224 - 1283	98	59 / 60	minus	None
MLOC	MLOC_6327.3	4039	7e-23	1811 - 1870	98	59 / 60	minus	ABC17426
JLOC1	JLOC1_52274.4	3605	8e-25	1610 - 1669	100	60 / 60	plus
JLOC1	JLOC1_52274.3	3481	8e-25	1486 - 1545	100	60 / 60	plus
JLOC1	JLOC1_52274.2	3910	8e-25	1915 - 1974	100	60 / 60	plus
JLOC1	JLOC1_52274.1	2826	8e-25	831 - 890	100	60 / 60	plus
JLOC1	JLOC1_4119.1	3982	4e-23	2113 - 2172	98	59 / 60	plus
Harvest21	ABC19201	662	3e-25	589 - 648	100	60 / 60	plus
Harvest35	U35_24387	805	3e-25	732 - 791	100	60 / 60	plus

Contig Sequence (805 bp)

>U35_24387 805 Hv_44K_v2
GGCAGTGTGTTTGCTCCAAGATCGTCTAAAGATAGCAGATTCTTAAGCTTTCTGAACTTT
GTTAGAGAACAAGAATTCGATGTGAATTTTTGGATTAAATCCCTGAATTCTCTTACTTGG
GTTGAAATACTACGCCAGGTTCTGGTTGCTTCAGGTTTTGGTTCAGACCATCATATGTTG
AATCGGAATTTCTTTAGCAAGGAGAAAAATCAAATGGTTAAATATGGGTTATGTCCTCGT
ACACTGAAAGGTGAATTGTTTGCACTATTGTCTGAGAAAGGAAGCGGTGGGTTAAAGGTT
GCTGAACTTGCCAAATCATCACAGATTATTGGTCTTAATCTCTCTGGCGCATCAGAAGTA
GAGCAGCTTATTTTCTCAACTCTCTCTAGTGATATCACGTTGTTTGAGAAGATTGCGCCT
TCTGCATATCGTCTCCGTGTTGATCCTCGGATTAAAGGAAAAGAAGATCCTAGATCAGAT
ACTGAGGATTCTGGAACTGTTGATGATGATGAGGATGCTAGCAGCAGTGGTGATGAATCT
GATGGTTCACAAGAGAGTTATCCTGAGCATGAAAGTAGAATTGTCAGGTGGAGACAGAAA
AGCATACATAAAAATGTGAATAAATGCAGTGAAATTGATGAAAGTTATTCCGGAGAACGA
TGGCTTCTAGGGTTGATGGAAGGCGAGTACTCAGACCTAAGCATCGATGAGAAGCTGGAT
TGCTTGGTTGCTTTGATAGATGTTGTTTCTGGTGCGGGTTCTGTTCCAAGGCTTGAGGAA
CCACAAAGTGTCCTGTCTAACATAC

Homology of Contig U35_24387 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi4g03302.1	644	4e-95
Arabidopsis v10	AT4G12750.1	1131	2e-56	Homeodomain-like transcriptional regulator \| chr4:7498009-7503920 REVERSE LENGTH=1131