- Probe CUST_4072_PI390587928
- Source Contig U35_28784
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4072_PI390587928 | Hv_44K_v2 | AAGAATGCAGTTGTTTCAGAACAGAAGAGGAAGCTTGTGGCTTACCATGAGGCTGGACAT | 354 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.854 | 1.054 | 2.048 | 2.134 | 0.946 | 0.689 |
| Raw | 30.064 | 56.831 | 98.177 | 158.305 | 25.195 | 20.286 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK253128.1 | 1166 | 2e-24 | 350 - 409 | 100 | 60 / 60 | plus | ABC41094 ABC41535 |
| MLOC | MLOC_72928.2 | 1498 | 2e-24 | 666 - 725 | 100 | 60 / 60 | minus | ABC41094 ABC41535 |
| MLOC | MLOC_72928.1 | 1847 | 2e-24 | 750 - 809 | 100 | 60 / 60 | minus | ABC41094 ABC41535 |
| JLOC1 | JLOC1_48538.1 | 2008 | 8e-25 | 1040 - 1099 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27847 | 667 | 3e-25 | 355 - 414 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02091 | 1555 | 3e-25 | 692 - 751 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02090 | 1201 | 3e-25 | 388 - 447 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28784 | 667 | 3e-25 | 355 - 414 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_673 | 1555 | 3e-25 | 692 - 751 | 100 | 60 / 60 | plus |
Contig Sequence (667 bp)
>U35_28784 667 Hv_44K_v2 GCTGAGTTCGTCGAGCTCTTCGTCGGCGTGGGTGCCTCCAGGGTGAGGGACCTCTTCGAG AAGGCCAAGGCCAAGGCGCCCTGCATCGTCTTCATCGACGAGATTGACGCCGTCGGGAGG CAGCGTGGTGCGGGAATGGGTGGGGGGAACGATGAGAGGGAGCAGACCATTAACCAGCTG CTCACGGAGATGGACGGCTTCTCCGGAAACAGCGGTGTCATCGTGCTCGCCGCGACCAAC AGGCCGGATGTGCTTGACTCCGCGCTTCTGCGGCCAGGGCGGTTCGATCGGCAGGTCACC GTCGACCGTCCGGATGTAGCCGGCCGTGTCAGGATCATTGCTGGGCCTGAGAAGAAGAAT GCAGTTGTTTCAGAACAGAAGAGGAAGCTTGTGGCTTACCATGAGGCTGGACATGCCCTC GTCGGTGCCCTGATGCCTGAATATGACCCTGTTGCCAAGATTTCCATCATTCCTCGAGGT CAGGCTGGTGGTCTCACGTTCTTTGCTCCAAGCGAAGAGAGGCTCGAGTCTGGACTGTAC AGCAGGAGCTACCTAGAGAACCAAATGGCTGTGGCACTTGGTGGCAGGGTTGCCGAGGAG GTGATCTTTGGCCAAGACAACGTGACAACTGGGGCATCCAGCGACTTCATGCAGGTCTCA CGTGTCG
Homology of Contig U35_28784 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g51029.2 | 619 | 7e-103 | protein|OsFtsH1 FtsH protease, homologue of AtFtsH1/5, expressed |
| Brachypodium v1_2 | Bradi1g29900.1 | 682 | 2e-103 | |
| Arabidopsis v10 | AT5G42270.1 | 704 | 3e-101 | | Symbols: VAR1, FTSH5 | FtsH extracellular protease family | chr5:16902659-16905102 FORWARD LENGTH=704 |