- Probe CUST_40727_PI390587928
- Source Contig U35_50653
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40727_PI390587928 | Hv_44K_v2 | CGAGTGTACCGCCAACAATGTCACATTCTCTCCGGTCTCCCTTCATGTCGCGTTGAGCCT | 133 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.447 | 0.945 | 0.843 | 0.805 | 1.238 | 1.102 |
| Raw | 7.610 | 6.254 | 5.899 | 7.467 | 3.285 | 3.186 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_19412.2 | 914 | 2e-24 | 468 - 527 | 100 | 60 / 60 | minus | ABC01877 |
| MLOC | MLOC_19412.1 | 1460 | 2e-24 | 1014 - 1073 | 100 | 60 / 60 | minus | ABC01877 |
| JLOC1 | JLOC1_13462.1 | 1363 | 8e-25 | 972 - 1031 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_13461.1 | 1539 | 8e-25 | 333 - 392 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52931 | 376 | 3e-25 | 134 - 193 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50653 | 376 | 3e-25 | 134 - 193 | 100 | 60 / 60 | plus |
Contig Sequence (376 bp)
>U35_50653 376 Hv_44K_v2 TCTCAACTCCAAGGAAATCCCAACGAAGCACCACCCCAACGATGGCAACCACCCTCGCCA CCGACGTCCGCCTCTCCATTGCGCACCAGACCCGTTTCGGTGTTCGCCTCGCCTCCGCTA TCTCATCCAACCCCGAGTGTACCGCCAACAATGTCACATTCTCTCCGGTCTCCCTTCATG TCGCGTTGAGCCTCATCACTGCTGGTGCCGGGGGTGCCACCCGTGACCAACTCCTAGTTA CACTAGGGGAAGGCGAGGCTGAGGGACTCCACGCGCTCGCCGAGCAGGTGGTGTAGTTCG TGCTCGCCGATGCATCCGGTGTCGGCGGTCCACGTGTCGCATTCGCCAACGGCGTCTTCG TGGACGCGTCCCTGCC
Homology of Contig U35_50653 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |