- Probe CUST_40725_PI390587928
- Source Contig U35_50655
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40725_PI390587928 | Hv_44K_v2 | AACAACTAGCAAATATCAATGAGCAATCCCGATGCCCAGCCATCCAAACCATTGTGCATG | 527 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.014 | 0.012 | 0.209 | 2.462 | 6.698 | 9.593 |
| Raw | 7.752 | 8.573 | 170.934 | 2873.440 | 2834.873 | 4449.010 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251750.1 | 1148 | 2e-24 | 672 - 731 | 100 | 60 / 60 | plus | ABC00209 ABC28950 ABC32362 |
| MLOC | MLOC_66711.1 | 2132 | 2e-24 | 1305 - 1364 | 100 | 60 / 60 | minus | ABC00209 ABC28950 ABC32362 |
| JLOC1 | JLOC1_43995.1 | 1222 | 8e-25 | 436 - 495 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC52948 | 587 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52934 | 599 | 3e-25 | 528 - 587 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52916 | 427 | 3e-25 | 341 - 400 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52759 | 618 | 3e-25 | 345 - 404 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00804 | 1131 | 3e-25 | 620 - 679 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00533 | 897 | 3e-25 | 395 - 454 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00521 | 1081 | 3e-25 | 620 - 679 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00209 | 1153 | 3e-25 | 658 - 717 | 100 | 60 / 60 | plus | ABC00209 |
| Harvest35 | U35_50655 | 599 | 3e-25 | 528 - 587 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50555 | 618 | 3e-25 | 345 - 404 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_331 | 584 | 3e-25 | 402 - 461 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_199 | 1131 | 3e-25 | 620 - 679 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_117 | 717 | 3e-25 | 631 - 690 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_67 | 1153 | 3e-25 | 658 - 717 | 100 | 60 / 60 | plus |
Contig Sequence (599 bp)
>U35_50655 599 Hv_44K_v2 ACAACCATATCCCGAGTCTCAGCAACCATTCATCAGTCAATCACCACAACAATTTCCCCT GCCACAACAATTATTTCCACAATGGCAACCACTTCCCCAACAACCACCATTTCTGCAGCA AGAGCCAGAACAACCATATCCACAACAACAACCACTTCCCCAACAACAACCATTTCCGCA GCAACCACAACTTCCCCATCAACATCAATTTCCACAGCAGCTGCCACAACAACAATTTCC GCAGCAGATGCCACTCCAGCCGCAACAACAACCACAATTCCCGCAACAAAAACCATTTGG CCAATATCAACAACCATTAACACAACAACCATATCCGCAACAGCAACCATTGGCACAACA ACAACCTTCTATAGAGGAACAACATCAATTGAACTTGTGCAAGGAGTTCCTCCTACAACA GTGCACCCTGGACGAGAAGGTACCATTACTCCAGTCAGTGATCTCGTTCCTCCGACCACA TATCTCGCAACAAAACAGTTGCCAATTGAAGCGACAACAATGTTGTCAACAACTAGCAAA TATCAATGAGCAATCCCGATGCCCAGCCATCCAAACCATTGTGCATGCCATCGTCATGC
Homology of Contig U35_50655 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |