barSeed - Barley Seed Development Database

Probe CUST_40713_PI390587928

Source Contig U35_48343

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40713_PI390587928	Hv_44K_v2	AACCGGAAAGAAAAACCTGTGTATCTTGTGTGCAAAATTCACTTCTTTTGTTCTATGAAC	21	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52140.2	2615	2e-24	1406 - 1465	100	60 / 60	minus	ABC17764
JLOC1	JLOC1_33371.7	1371	8e-25	1123 - 1182	100	60 / 60	plus
Harvest21	ABC17764	657	3e-25	548 - 607	100	60 / 60	plus	ABC17764
Harvest35	U35_48343	553	3e-25	22 - 81	100	60 / 60	minus
Harvest35	U35_28423	630	3e-25	548 - 607	100	60 / 60	plus
Harvest35	U35_21837	712	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (553 bp)

>U35_48343 553 Hv_44K_v2
CAGGGNNCATTATTCATTGAAGTTCATAGAACAAAAGAAGTGAATTTTGCACACAAGATA
CACAGGTTTTTCTTTCCGGTTTCTCCTACAAGAGATGTATTATTAAAGTAAATCGATTAT
GCTTGAACTACATACTGTGGTAAGCATTAGAACCACCACACAGGATGTCATTAATTGAAA
TATCTCCAATGTCTTTTCTGATGAACACAGGACTGGCTTGTCGTAATGCATCTTCATCTA
GAGAAGTCGTCACAGCAATACATCGTATTTCTGCAGCTTCCGCAGCTTGAACTCCAGCAA
GCGCATCTTCTATCACGATGCACTCATCCGTGTCAACACCTAAGTTCTTAGATGCTGCAA
GGAAAATGTCTGGAGCCGGCTTTAAATTTTCAAAAGCATCAGCGGAAACAATAGCATCAA
ATAGCGATACAGGCAAACCAGCAGCTGCCAGATTCGCGTCAACCTTAACCCTATCAGCGC
TAGATGCAACAGCGACCTTCAGACCTGCGTTTTTGCACTCCATGATGAGTTCCAGAGCCC
CAGGGAACCCAAT

Homology of Contig U35_48343 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g19760.2	773	3e-63	protein\|HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
Brachypodium v1_2	Bradi1g64267.1	899	6e-67
Arabidopsis v10	AT1G56500.1	1055	3e-51	haloacid dehalogenase-like hydrolase family protein \| chr1:21159775-21167092 FORWARD LENGTH=1055