- Probe CUST_40712_PI390587928
- Source Contig U35_48344
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40712_PI390587928 | Hv_44K_v2 | ACGTACACAGCTGGTTCTTGAAGCTCTTATCTGATGTACTACATCTTAGGTCAGCCCATG | 3 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.098 | 1.307 | 1.176 | 1.047 | 0.415 | 0.475 |
| Raw | 777.820 | 1447.016 | 1135.927 | 1620.757 | 222.078 | 275.508 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_47637.2 | 2517 | 1e-22 | 1543 - 1601 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_47637.1 | 2507 | 1e-22 | 1533 - 1591 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC50005 | 536 | 3e-25 | 4 - 63 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_48344 | 536 | 3e-25 | 4 - 63 | 100 | 60 / 60 | minus |
Contig Sequence (536 bp)
>U35_48344 536 Hv_44K_v2 TGACATGGGCTGACCTAAGATGTAGTACATCAGATAAGAGCTTCAAGAACCAGCTGTGTA CGTAAATGGCTAAGAATTATTTCCGGATACATTGGCTGAAGTCTGGAGGGTAAACTGTTA CACATTCTACATCACAGACGAGAAAAATCATCACATGTATCTACCATCAATGACAAGTAT CAGCTGAGCTTGTTATCAAGTTGCCCTCGCGGACCTAAAGATAACTCAGTCATGAGAGCA ATATAAATATCCCCAGGTAACAAAGGTGGCGACCAACACACATCTTCCTGCATCTAACTG TTGCTCAGACACATCTTTCGGCAACACAAAGCTTGGGCAGGATGCATGCTCCACCATTTC ATGGGCATTTCCTCTGGATATAGGAAACGCCGTGCTCTTCGTACTCTGCTTTGGAGAACC ACATTTGCTGGAACGACCCAAGGGATGCAAGGATGCTCCCTCCAATCCAGACACTGAATC GCCTCTCTATTGAGTTTCCACTTGCCAAAACCTTCACACGAGCATTTTGAGGGCAC
Homology of Contig U35_48344 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |