- Probe CUST_40711_PI390587928
- Source Contig U35_48346
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40711_PI390587928 | Hv_44K_v2 | ATTGCTCTTTTCTCAAAGAGGAAATGTAGGGCTTTAGATTGTATATTCTTTGACAAAGGG | 3 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.725 | 2.425 | 1.165 | 0.888 | 0.414 | 0.499 |
| Raw | 366.394 | 518.035 | 216.019 | 255.127 | 43.589 | 55.541 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_44433.1 | 3412 | 2e-24 | 86 - 145 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_44433.3 | 2390 | 2e-24 | 63 - 122 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_44433.2 | 2835 | 2e-24 | 86 - 145 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_28803.6 | 2133 | 8e-25 | 1893 - 1952 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28803.5 | 3044 | 8e-25 | 2804 - 2863 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28803.4 | 2707 | 8e-25 | 2467 - 2526 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28803.3 | 2241 | 8e-25 | 2001 - 2060 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28803.2 | 3049 | 8e-25 | 2809 - 2868 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28803.1 | 2498 | 8e-25 | 2258 - 2317 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC50009 | 509 | 3e-25 | 4 - 63 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_48346 | 509 | 3e-25 | 4 - 63 | 100 | 60 / 60 | minus |
Contig Sequence (509 bp)
>U35_48346 509 Hv_44K_v2 TTTCCCTTTGTCAAAGAATATACAATCTAAAGCCCTACATTTCCTCTTTGAGAAAAGAGC AATCAAATGAATTTTCATCAGAGTTTTTGTTGTACATCAGAGTTAGAAAATTAAGTAACT GCACACCATTGTTACTAACAACAGAATCAGGAACTTTTGCCACTGAAGTCTCCATCCCGA GGAGATATCGTGCGCATCAACTGTGTATGTTGCCCCTGTCTTTTCATCCTTAACTTTCAT GCTAGAGGAGCAGTTGTAATCGGCCCATCCAACGACTTGGTTTTCCAAGTCATAGACAAC CACCTTATTTGAAAGGACCAGATCTTCTAGAAGCACCATATCCTTTCCATCCTTTGATTG CAATCCACCATTTTGGAATCCAACACAATACAGGTTATCCCCGTTTTGGAAAAAGTAATC ATGTGGATACACATTCAGTCCAAGATCATTCTCAAAATGGAAGATGATTTTTGGAAATCC ATCATCTACACTTTCATGATACTGAAAAC
Homology of Contig U35_48346 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g26834.1 | 333 | 3e-77 | protein|eukaryotic aspartyl protease domain containing protein, expressed |
| Brachypodium v1_2 | Bradi3g42090.1 | 489 | 2e-80 | |
| Arabidopsis v10 | None |