barSeed - Barley Seed Development Database

Probe CUST_40710_PI390587928

Source Contig U35_48347

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40710_PI390587928	Hv_44K_v2	CTATCTAAACGGGCGATGCAGTCTGCTGCTGTTATGCTATCTCCGATGCCTTTATATATC	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45502.1	720	3e-21	353 - 412	97	58 / 60	plus	ABC00037 ABC00180 ABC00434 ABC00499
JLOC1	JLOC1_29543.1	553	2e-21	354 - 413	97	58 / 60	plus
Harvest21	ABC50010	601	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_48347	601	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (601 bp)

>U35_48347 601 Hv_44K_v2
GATATATAAAGGCATCGGAGATAGCATAACAGCAGCAGACTGCATCGCCCGTTTAGATAG
AGAAAGGGGCACATTTCTTCAGCCTTCTGCTGAACTTGAGCAAGCACTTTCTGGGGTTGA
GGCTGGCCTGCAAAGGAGCTGGTAGCACCAGCTGACAGTACAAATTCCATTGCATTCAGA
TTCATTCCTTGCAAGAAACAAGAATTCCATTACATTCAGATCCATCGCCTTCCCGCTAAC
TACACAGACCGACGGAACAACAACGCACGCATAAAGAATTCAGAAAGGAAACCATAGCAC
CGGAACAGCAGCAGCAGCTAGCAGGGCCGACTCAAGAGGGCAGCGGCGGACGCAGGTCAG
CCGCCGAATCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCG
GTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCG
AGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATCAGTCCGGAGATGCGCTTCACG
CCGCCACGCCGGGCCAGACGGNGGATGGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGG
A

Homology of Contig U35_48347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None