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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_40709_PI390587928Hv_44K_v2GTGGAAAAAACAAACTGAATATTTGTCTCCCATGCTGCTGGTCATTGTACCCGCAGTACA6GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4931.6481.2230.8530.4050.455
Raw 5275.6779195.6175908.5206531.4931081.9571321.586



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36612321103e-221977 - 20359859 / 60plus ABC01956 ABC01958 ABC49950
MLOCMLOC_70791.219613e-221860 - 19189859 / 60plus ABC01956 ABC01958 ABC49950
JLOC1JLOC1_46999.120491e-221859 - 19179859 / 60plus
Harvest21ABC500146063e-257 - 6610060 / 60minus
Harvest21ABC019588035e-2369 - 1279859 / 60minusABC01958
Harvest35U35_483486063e-257 - 6610060 / 60minus



Contig Sequence (606 bp)

>U35_48348 606 Hv_44K_v2
CGGACATGTACTGCGGGTACAATGACCAGCAGCATGGGAGACAAATATTCAGTTTGTTTT
TTCCACCGACAGGTAACAAGTTCCCGAGAGGTAACAAGCTCACGGTCTGGCCGCTCATGT
GTCACACAAAAAGAGAACTCTCTTCCTTAAAGGGCAGTAAGCCAAATAAATAGGTCACTG
CAAATCCTTATTCGGGAAAAAGTGGAGGGGGGAAACATCCATCAGCAGGGCCGGGCCTCC
TGCCTCTACGTACATATCCTGGCTAACAAACAGTAAAACCACAACAGGTTGACCACAAAA
AGGTTAAAATTGCACGTTGCTTGTAAGGAGGGAGTTTCTTATCAAGCATTCTCCTTGGCA
ATCTTCTCTGCCTTGGCAATGACCTCCTCTATTCCTCCAACCATGTAGAATGCCTGAGTG
AAACGGAAAATGTTATCAATGAAGAGAAGCACATCCTGTCCTTCGGCATCACGGAAATGC
TCAGCGACAGTCAAACCAGTCAGTCCAACACGAGCACGAGCACCAGGGGGCTCATTCATT
TGCCCGTACACAAGAGCACACTTGCTCTCACTCTGCTTGTCGTCGAGCTTAATGACACCA
CTCTCA



Homology of Contig U35_48348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None