barSeed - Barley Seed Development Database

Probe CUST_40700_PI390587928

Source Contig U35_50661

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40700_PI390587928	Hv_44K_v2	TTATGAAGATTGTATGATGAAGGAAGGAGAATCAGAGGCGGTTTCACCCTGTGCCAGTTC	421	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.569	1.368	1.143	0.828	0.423	0.375
Raw	338.491	455.124	336.478	368.085	69.684	66.761

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74807.5	2852	2e-24	1938 - 1997	100	60 / 60	plus	None
MLOC	MLOC_74807.2	2993	2e-24	2282 - 2341	100	60 / 60	plus	None
MLOC	MLOC_74807.3	2657	2e-24	1946 - 2005	100	60 / 60	plus	None
MLOC	MLOC_74807.4	2729	2e-24	1851 - 1910	100	60 / 60	plus	None
MLOC	MLOC_74807.6	2851	2e-24	1937 - 1996	100	60 / 60	plus	None
JLOC1	JLOC1_49873.1	2825	8e-25	1858 - 1917	100	60 / 60	plus
Harvest21	ABC52951	533	3e-25	422 - 481	100	60 / 60	plus
Harvest35	U35_50661	533	3e-25	422 - 481	100	60 / 60	plus

Contig Sequence (533 bp)

>U35_50661 533 Hv_44K_v2
GTACCGTTAGGAGATTCCTTGAAGAGGAATGGAAGCATTTAAGGAAGAACCCTCCTTCTG
ACATTTCTCTTTCAGACACAATATGGGAGGATCTTCCAAGGAACATACACAAGGAAATTG
TTGAGGTTCCAGGGCAGAACAATGCGTATGATTGTGGCATCTTCATGCTTTACTATATTC
AACGGTTTATAACTGAAGCACCAGAAATTTTCACAAGAGATAGACTTGACATGTTTAGTC
GCAGTTGGTTTAGATCTGAAGAGGCTTCTAAGTTAAGAAAGGAGATACGGAAACTACTGC
TGAAAGAGTTTGGAAGTGCGAGGGTTGATGATGTTATGTCTGAGGCAGCTACAGGTGATG
GCTCTGATGATGACTGTTTCATGAAGGAGGTAGAATCAGAGGCACCTACAGCTGATGGCT
CTTATGAAGATTGTATGATGAAGGAAGGAGAATCAGAGGCGGTTTCACCCTGTGCCAGTT
CAGAAATGGGTGTAGATGATGTTAAGCCAGAGGCAGCAACATCTGATGGCTCT

Homology of Contig U35_50661 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g02360.1	670	3e-57
Arabidopsis v10	None