barSeed - Barley Seed Development Database

Probe CUST_406_PI415269222

Source Contig TA53527_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_406_PI415269222	Hv_44K_v2	CTTGAATGGGACAGATTAAGGTCTGTGTATGAATGAAGTGGTGGGGACTTTCTTTGGTTG	407	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51028.1	3413	2e-24	3192 - 3251	100	60 / 60	plus	None
MLOC	MLOC_51028.2	2131	2e-24	1910 - 1969	100	60 / 60	plus	None
JLOC1	JLOC1_32561.1	2267	8e-25	1893 - 1952	100	60 / 60	plus
Harvest35	U35_26006	502	3e-25	424 - 483	100	60 / 60	plus

Contig Sequence (469 bp)

>TA53527_4513 469 Hv_44K_v2
CACGGCGGCCACGCAGACCTTCCTGGGGCGGCCGTGGAAGGCGTACTCGCGGGTGGTGTT
CATGCAGTCGTACATCGGCGCCGTGGTGCGGCCGGAGGGGTGGCTCGCGTGGGACGCCAA
CCAGTCCACGCTCGCCACGCTNTANTACGGGGAGTACATGAACACCGGGCCAGGCGCCGC
CGGCGTCGGCGGCAGGGTGAGATGGCCGGGCTACCACCTGGCGATGAGCCCCGCGGAGGC
CAGCAACTTCACCGTTGCGCAGTTCATCGAGGGCAACATGTGGCTGCCGACCACGGGCGT
CCGGTTCACGTCCGGGCTGCTCGCGTCTTAGATCCATCATCTCGCGAGTAGTCGCTTACT
CGTCACATACGAGTAGTAGAGTACTTAACTTGGGGATGGTTGTGGTTCTTGAATGGGACA
GATTAAGGTCTGTGTATGAATGAAGTGGTGGGGACTTTCTTTGGTTGGT

Homology of Contig TA53527_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None