barSeed - Barley Seed Development Database

Probe CUST_406_PI390587928

Source Contig U35_9310

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_406_PI390587928	Hv_44K_v2	ATGTTAACTCGTTGACACCAATACATCGTACTCCTGTTAATCGAGGTCCATCGTTTTGAT	660	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.568	1.528	1.162	0.913	0.394	0.381
Raw	1733.430	2689.790	1782.793	2193.477	332.198	350.620

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18425.1	1088	7e-23	1003 - 1062	98	59 / 60	plus	ABC16161
JLOC1	JLOC1_12755.1	1033	4e-23	907 - 966	98	59 / 60	plus
Harvest21	ABC34018	671	3e-25	609 - 668	100	60 / 60	plus
Harvest21	ABC16161	779	1e-23	11 - 70	98	59 / 60	minus	ABC16161
Harvest35	U35_9310	723	3e-25	661 - 720	100	60 / 60	plus
Harvest35	U35_7878	779	1e-23	710 - 769	98	59 / 60	plus

Contig Sequence (723 bp)

>U35_9310 723 Hv_44K_v2
GACCACATGTACCGGATGGGAGTCATGGCGCTTGTCGCCGCCGACCTTCCGGCCGGCGTC
AACCGCGATAGGTGTGTGAAAATGGCGATTGTGCATGACATAGCCGAAGCTATTGTTGGC
GATATCACGCCTGTTGATGGTGTGCCCAAGGAAGAGAAGAGCCGTAGAGAGAAGGAAGCT
TTGGACCATATGTGCACATTGCTTGGTGGAGGTTCAAGAGCCGACGAAGTTCGTGAGCTT
TGGATGGAGTATGAGAACAATGCCACTTTGGAAGCGAAGGTCGTCAAAGATTTTGACAAG
GTTGAGATGATACTTCAAGCACTGGAATACGAAAAGGAGCAAGGGCATGACCTAGAAGAG
TTCTTCCAATCGACGGCAGGGAAATTCCAAACAGACGTCGGAAAAGCATGGGCAGCAGAG
GTCGCATCGAGAAGAAAGTGAAAACAACTGATCAAATGGCAAAGTCACGAGCCCTCTCGG
TGCTTCTTTTTTCGGACACAATTGTCAGCGCCGGATCTGTACCATGTTTCACTCCAGGGC
CCTCGATTAGGGCCCTCCAGATCAGCCAGTTGTATTGCAAAGCGGGTCTTTTTTACTTGT
AGTTCGCCTGGCCATGCCCAGCACCAAGTTGGTAGGATCAGCCCCTTTCTGATGTAAAAT
ATGTTAACTCGTTGACACCAATACATCGTACTCCTGTTAATCGAGGTCCATCGTTTTGAT
CGT

Homology of Contig U35_9310 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g08260.1	229	4e-93	protein\|HD domain containing protein 2, putative, expressed
Brachypodium v1_2	Bradi3g05900.1	244	8e-96
Arabidopsis v10	AT2G23820.2	257	4e-76	Metal-dependent phosphohydrolase \| chr2:10140595-10142672 FORWARD LENGTH=257