- Probe CUST_40695_PI390587928
- Source Contig U35_50664
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40695_PI390587928 | Hv_44K_v2 | ATTAATCATGGTGGAAATGGTAATAAATCAAGCTATAATGCGATTCAAGTTGGCTGGCAT | 329 | GeneList: lightcyan1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.179 | 0.312 | 1.141 | 2.237 | 1.196 | 1.637 |
| Raw | 80.706 | 209.408 | 690.307 | 1968.697 | 417.295 | 622.077 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_16261.2 | 618 | 2e-24 | 186 - 245 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_16261.1 | 1103 | 2e-24 | 671 - 730 | 100 | 60 / 60 | minus | None |
| Harvest21 | ABC52955 | 392 | 3e-25 | 330 - 389 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50664 | 392 | 3e-25 | 330 - 389 | 100 | 60 / 60 | plus |
Contig Sequence (392 bp)
>U35_50664 392 Hv_44K_v2 ATAAGCTTAGTCTACTTCGAAGAGCAATTGCCTTATATTTCTTTTATCATGCTCTTCAAA CTAGTGGTGTCCGGTTCTTCCCTACGATTGAACAGGAAAATGATTCACTGGCCAATAATT TTGTCCATGGCCCAGGCAAACAAATTCTAAGAAGTTTGAAGTCAAACTCCACTGAAGCAA TAACTTCTAGTTTATGGGATGATACCTATTTCGTGTCACACCTAACACATTCTGGAGGTC CTAATGACAACTACTATGGCTTACATGCCACCATGGATGTGTATGGACACGAACTAAAAC ATGGCCAGTGGAGTTCGACTACGTTTTGGATTAATCATGGTGGAAATGGTAATAAATCAA GCTATAATGCGATTCAAGTTGGCTGGCATATT
Homology of Contig U35_50664 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |