- Probe CUST_40691_PI390587928
- Source Contig U35_50668
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40691_PI390587928 | Hv_44K_v2 | TGTTTCAGGTTGGCTTGAAGATGCTGCACTTTTCGCTGCTATCGACAATAGCATCAATGC | 461 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.356 | 0.460 | 0.973 | 1.551 | 1.316 | 1.417 |
| Raw | 50.347 | 86.212 | 188.541 | 446.179 | 140.274 | 164.174 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376462 | 2164 | 2e-24 | 739 - 798 | 100 | 60 / 60 | plus | ABC26451 |
| MLOC | MLOC_69929.3 | 1650 | 2e-24 | 520 - 579 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_69929.1 | 2030 | 2e-24 | 535 - 594 | 100 | 60 / 60 | plus | ABC26451 |
| MLOC | MLOC_69929.2 | 2027 | 2e-24 | 535 - 594 | 100 | 60 / 60 | plus | ABC26451 |
| MLOC | MLOC_69929.4 | 1779 | 2e-24 | 401 - 460 | 100 | 60 / 60 | plus | ABC26451 |
| JLOC1 | JLOC1_46367.2 | 1636 | 8e-25 | 110 - 169 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46367.1 | 1871 | 8e-25 | 348 - 407 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52961 | 638 | 3e-25 | 462 - 521 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50668 | 638 | 3e-25 | 462 - 521 | 100 | 60 / 60 | plus |
Contig Sequence (638 bp)
>U35_50668 638 Hv_44K_v2 GACCTGCCCGAGGGGTACGAGCAGATGATGCCGACCGTGGATGCCTCCCAGCGGCGGCGC GCAGGGGTTCTGCTGCACCCGACGTCGCTCCGCGGCCCGCACGGCATCGGCGACCTCGGC GACCAGGCGCTCGCGTTCCTCGACTGGCTCCACGGCGCCGGGTGCACGCTCTGGCAGGTT CTTCCACTTGTCCCCCCCGGAAGAAAATCCGGGGAGGATGGTTCTCCTTATTCAGGACAG GATGCAAACTGTGGTAGTACACTATTGATTTCTCTTGAAGAGCTTGTTAAAGATGGACTG TTGATGGAAAACGAACTTCCTGATCCTTTAGATATGGAATATGTTGAATTTGACACTGTT GCTAATCTGAAAGAACCACTTATTGCCAAGGCAGCAGAGAGGCTCCTACAGAGCCCTGGA GAGCTCCGAAGGCAGTATGACGAATTCAAGAAAAATCCAGATGTTTCAGGTTGGCTTGAA GATGCTGCACTTTTCGCTGCTATCGACAATAGCATCAATGCAGTGTCCTGGTCTGAGTGG CCTGAACCGCTGAAAGATCGCCATCCTGGAGCCTTGAAAGATATGTATGANAACCAGAAG GACTTTATAGAAAATTTTATGGCACAACAGTTCTTATT
Homology of Contig U35_50668 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g43390.1 | 595 | 2e-126 | protein|4-alpha-glucanotransferase, chloroplast precursor, putative, expressed |
| Brachypodium v1_2 | Bradi1g20790.1 | 587 | 2e-129 | |
| Arabidopsis v10 | AT5G64860.1 | 576 | 1e-91 | | Symbols: DPE1 | disproportionating enzyme | chr5:25925373-25928788 REVERSE LENGTH=576 |