barSeed - Barley Seed Development Database

Probe CUST_40684_PI390587928

Source Contig U35_48353

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40684_PI390587928	Hv_44K_v2	AAGTCTCTAACACAAGCTTGACTTGGATGGCAGCCAGGTAACAGTAGGCTTTTCATATGG	242	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.131	1.489	1.389	0.877	0.381	0.314
Raw	65.867	140.559	111.880	117.501	17.095	15.209

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368758	3597	2e-24	3347 - 3406	100	60 / 60	plus	None
MLOC	MLOC_60899.3	2634	2e-24	314 - 373	100	60 / 60	minus	None
MLOC	MLOC_60899.6	2541	2e-24	228 - 287	100	60 / 60	minus	None
MLOC	MLOC_60899.7	2405	2e-24	169 - 228	100	60 / 60	minus	None
MLOC	MLOC_60899.5	2669	2e-24	263 - 322	100	60 / 60	minus	None
MLOC	MLOC_60899.1	2327	2e-24	375 - 434	100	60 / 60	minus	None
Harvest21	ABC50023	602	3e-25	243 - 302	100	60 / 60	minus
Harvest35	U35_48353	602	3e-25	243 - 302	100	60 / 60	minus

Contig Sequence (602 bp)

>U35_48353 602 Hv_44K_v2
AATCTGTATTTTACTTGGNGAGTTGTAACATTATAATAAAGCTCTGATTGTCACGGGCAA
AAACCGCTGTGCACCTCATGTGTATATATAATCAGCTGGATCCAGTTATGCAATACTTCA
TCTATATCAAAGTTGCGATTTTTACAGAGTTAAAACTCATTGCTGGAGTAATCTACTACT
ACTAGATAGTGGTCAATGTCTACTTCTAACCTGTATCTAAGACTGCCGGGGAAGAAGGCC
ATCCATATGAAAAGCCTACTGTTACCTGGCTGCCATCCAAGTCAAGCTTGTGTTAGAGAC
TTCTCTGCCAATGAGGAATCAAGACGGCGATCTAGACAAGAAACACGTTCGAGCAGTAGG
TGATTCTACTGACCATGAATTAGAAGTATCCGCGTGTGCAACCTCGAGGAAACGGGGTTC
ATCAGATGTGATGTTATTCAGCTATTGATCCGCAGTGTTGAAGATCTCTTCAGATTCCAT
TGGAGATGACCAGTAACGGAGTAGGGCTTCCACTGTCAATCGCCGTGTCGCACTCAACAT
TGAGATGAAGAACCGACAGCCGTCAATCTTATACTCCTCTAGAGGATTTCTGTGCCCAAA
GC

Homology of Contig U35_48353 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None