barSeed - Barley Seed Development Database

Probe CUST_40682_PI390587928

Source Contig U35_48357

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40682_PI390587928	Hv_44K_v2	GCTCGTCACCTTTCATTATCACACAGCATATGACGAACTGGTTTGTGCTGCAGTAAAAAA	12	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.238	1.561	1.359	0.916	0.213	0.278
Raw	643.960	1253.862	958.655	1051.638	80.864	117.210

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC50033	655	3e-25	13 - 72	100	60 / 60	minus
Harvest35	U35_48357	655	3e-25	13 - 72	100	60 / 60	minus

Contig Sequence (655 bp)

>U35_48357 655 Hv_44K_v2
TGGTCAGCCCTTTTTTTTACTGCAGCACAAACCAGTTCGTCATATGCTGTGTGATAATGA
AAGGTGACGAGCAATGAGTATGCATACTGATTGTGAATCAGAAAAGCTTTCTCAATAGAC
TGTTCCCTAAGACACTACCGCAGATTCTTCAAGACATAAGAGGAAGTTGGAGATCTTCCT
AAAGTGTGGCATCTCTTGTCTTCTTTCTTCTTCACAGGTGTGGTGCACTCGTTGAAATCA
AGAATCCTTGCTTCGGACAAGCCGTTGGATGTCTGATTGGTTGTAACATGTTCCTTCTTG
ATAACAATATGTTTTATGTTTTCCTCATTACATAGGCTCCTACTTGCCAGGAGTTCATGG
GCTTCCTCCAGAGCAGGAGCGTTCTGCTCATTTATTTGCTTAACCAGTCCTAGAGCATCA
AAAGTTGTTCCTGTTGGGCTCATGAAGAATCCATCCTGGAAGTTTGTGAACAAAGGGGAC
TTCCATGCAGAAGGAGATTCTAAACCTCTTTTGATTCCTGGGGTATCAGCCAATATGTTT
ACATACTCATAATCAGCATAAGATTTTTCAACGAGAAGTTCTGTTGGTTTTGATCGAGAA
AATATTATGTCTTTAGAAAAAGACTTTGTAGGGGTATTTAGCTTCCGACGTTCTG

Homology of Contig U35_48357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g31887.1	926	9e-67
Arabidopsis v10	None