- Probe CUST_40677_PI390587928
- Source Contig U35_50674
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40677_PI390587928 | Hv_44K_v2 | TTTCTCTTGCAACAGTGCAGGCCTGTGTCATTGTTATCGTACCTCTGGTCAAAGATCTTG | 524 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.281 | 1.779 | 3.078 | 3.607 |
| Raw | 11.135 | 14.137 | 1101.132 | 10214.360 | 6367.020 | 8194.130 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_45609.1 | 564 | 7e-23 | 501 - 560 | 98 | 59 / 60 | minus | ABC00518 ABC00817 ABC28944 ABC32433 ABC43834 |
| JLOC1 | JLOC1_29606.1 | 580 | 4e-23 | 517 - 576 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC52968 | 606 | 3e-25 | 525 - 584 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52722 | 643 | 3e-25 | 341 - 400 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00817 | 1613 | 3e-25 | 882 - 941 | 100 | 60 / 60 | plus | ABC00817 |
| Harvest21 | ABC43786 | 601 | 1e-23 | 262 - 321 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00557 | 617 | 1e-23 | 442 - 501 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32500 | 623 | 2e-22 | 446 - 502 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC52970 | 608 | 6e-22 | 555 - 608 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC00810 | 837 | 6e-22 | 284 - 340 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC00764 | 1235 | 6e-22 | 682 - 738 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC00219 | 1247 | 6e-22 | 688 - 744 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_50674 | 606 | 3e-25 | 525 - 584 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50609 | 554 | 3e-25 | 429 - 488 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50529 | 643 | 3e-25 | 341 - 400 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_208 | 918 | 3e-25 | 564 - 623 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22 | 1147 | 3e-25 | 558 - 617 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45222 | 601 | 1e-23 | 262 - 321 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_228 | 708 | 1e-23 | 427 - 486 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_216 | 617 | 1e-23 | 442 - 501 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_36975 | 623 | 2e-22 | 446 - 502 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_69 | 1247 | 6e-22 | 688 - 744 | 98 | 56 / 57 | plus |
Contig Sequence (606 bp)
>U35_50674 606 Hv_44K_v2 TAATACCAATCCACCATGAAGACCTTCCTCATCTTTGCACTCCTCGCCATTGTGGCAACA AGTACCATTGCACAGCAACAACCATACCCACAACAACCACAACCATTTCCACAACAACCC ATCCCACAACAACCACAACCATACCCACAACAACCACAACCATTTCCACAACAGCCCATC CCACAACAACCACAACCATACCCACAACAACCACAACCATTTTCACAACAGCCCATCCCA CAACAACCACTACCATACCCACAACAACCACAACCATTTCCACAACAACCCAACGGCCAC TACTACCGTTTACCCACCCGTTCCTACCATTCCCCGACCAACTACTCCCTCAGCCACCAC ACCAATCATTCCCCCAGCCCCCACAATCATACCCTCAGCCACCGTTACAACCTTTTCCTC AGCCCCCGCAACAAAAATATCCCGAGCAACCACAACAACCATTTCCTTGGCAACAACCAA CTATTCAGCTATATCTCCAACAACAACTGAATTCGTGCAAGGAGTTTCTCTTGCAACAGT GCAGGCCTGTGTCATTGTTATCGTACCTCTGGTCAAAGATCTTGCAACAGAGCAGTTGTC GGGTGA
Homology of Contig U35_50674 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |