- Probe CUST_40674_PI390587928
- Source Contig U35_36383
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40674_PI390587928 | Hv_44K_v2 | AACAGCAACTCAGGCGCTATTCAAACAAAGAGGATGAACCAAAAAGGAGGTTAGAAGATG | 435 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.366 | 1.168 | 1.017 | 0.744 | 0.551 | 0.591 |
| Raw | 253.189 | 296.854 | 256.415 | 259.350 | 76.282 | 90.476 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_20411.9 | 762 | 2e-24 | 322 - 381 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_20411.1 | 1800 | 2e-24 | 1365 - 1424 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_20411.6 | 1512 | 2e-24 | 1004 - 1063 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_20411.4 | 2199 | 2e-24 | 1767 - 1826 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_20411.2 | 1931 | 2e-24 | 1522 - 1581 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_20411.3 | 1259 | 2e-24 | 850 - 909 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_20411.5 | 2184 | 2e-24 | 1676 - 1735 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_20411.7 | 1252 | 2e-24 | 744 - 803 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_20411.8 | 1924 | 2e-24 | 1416 - 1475 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_14140.8 | 1809 | 8e-25 | 1342 - 1401 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14140.7 | 1850 | 8e-25 | 1342 - 1401 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14140.6 | 1549 | 8e-25 | 1082 - 1141 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14140.5 | 1732 | 8e-25 | 1104 - 1163 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14140.4 | 1336 | 8e-25 | 749 - 808 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14140.3 | 1637 | 8e-25 | 1009 - 1068 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14140.2 | 1476 | 8e-25 | 1009 - 1068 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_14140.1 | 1399 | 8e-25 | 771 - 830 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36383 | 519 | 3e-25 | 436 - 495 | 100 | 60 / 60 | plus |
Contig Sequence (519 bp)
>U35_36383 519 Hv_44K_v2 GGCGAATTGGGCCTTCAGATAGATGCTCGAGCGGCCGCTATTATCTTGAAAGACTTCAAA CTTCTGAGGCTGAAATAAAGGCATTGTCTTTCAATTATGCTGCCATGTTGAAGGAAAAGG AGGAGCAACTGGTAAAATTTCGTGAAGAAAATGGCTCATTGAGAAGAAGTATGGAGAGCT CTAACTATAAGGCAGTCTCAGGCAATTCTAATGGTGCTTTGCAAAGATCACCTAGCAGAA TGCAAAGAAACACAGATCAAGAAAAAACATTGAGCTTCTTAAAGCAGAATGAGTATGGTG GTGGTGCTTCACAGGTTATACAGCAAAATGGTCCGCACCCATTGCCAGGGCATTATAAGG GAGATGTACTGGAGGAAGAAAGAGAATATTTTGCTGCTAAACAGGCTAGTCTTGAAAATG AAATTAAACAATTGAAACAGCAACTCAGGCGCTATTCAAACAAAGAGGATGAACCAAAAA GGAGGTTAGAAGATGAAAACAAGAGGAACGAATTCCTTC
Homology of Contig U35_36383 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g34800.1 | 732 | 7e-74 | |
| Arabidopsis v10 | None |